Evidence map›Paper›PMID 27869781›Full record

ArticleMolecules (Basel, Switzerland)2016

Molecular Docking Optimization in the Context of Multi-Drug Resistant and Sensitive EGFR Mutants.

María Jesús García-Godoy, Esteban López-Camacho, José García-Nieto, Antonio J Nebro, José F Aldana-Montes

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Bioinformatics and biology insights · 2023
    Article
  6. Frontiers in pharmacology · 2023
    Article
  7. Article
  8. Article
  9. BioMed research international · 2021
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

María Jesús García-GodoyKhaos Research Group, Departament of Computer Sciences, University of Málaga (UMA), ETSI Informática, Campus de Teatinos, 29071 Málaga, Spain. mjgarciag@lcc.uma.es.
Esteban López-CamachoKhaos Research Group, Departament of Computer Sciences, University of Málaga (UMA), ETSI Informática, Campus de Teatinos, 29071 Málaga, Spain. esteban@lcc.uma.es.
José García-NietoKhaos Research Group, Departament of Computer Sciences, University of Málaga (UMA), ETSI Informática, Campus de Teatinos, 29071 Málaga, Spain. jnieto@lcc.uma.es.
Antonio J NebroKhaos Research Group, Departament of Computer Sciences, University of Málaga (UMA), ETSI Informática, Campus de Teatinos, 29071 Málaga, Spain. antonio@lcc.uma.es.
José F Aldana-MontesKhaos Research Group, Departament of Computer Sciences, University of Málaga (UMA), ETSI Informática, Campus de Teatinos, 29071 Málaga, Spain. jfam@lcc.uma.es.
Universidad de Málaga · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human Epidermal Growth Factor (EGFR) plays an important role in signaling pathways, such as cell proliferation and migration. Mutations like G719S, L858R, T790M, G719S/T790M or T790M/L858R can alter its conformation, and, therefore, drug responses from lung cancer patients. In this context, candidate drugs are being tested and in silico studies are necessary to know how these mutations affect the ligand binding site. This problem can be tackled by using a multi-objective approach applied to the molecular docking problem. According to the literature, few studies are related to the application of multi-objective approaches by minimizing two or more objectives in drug discovery. In this study, we have used four algorithms (NSGA-II, GDE3, SMPSO and MOEA/D) to minimize two objectives: the ligand-receptor intermolecular energy and the RMSD score. We have prepared a set of instances that includes the wild-type EGFR kinase domain and the same receptor with somatic mutations, and then we assessed the performance of the algorithms by applying a quality indicator to evaluate the convergence and diversity of the reference fronts. The MOEA/D algorithm yields the best solutions to these docking problems. The obtained solutions were analyzed, showing promising results to predict candidate EGFR inhibitors by using this multi-objective approach.

Indexed as

Molecular Docking SimulationAlgorithmsBinding SitesDrug Resistance, MultipleDrug Resistance, NeoplasmErbB ReceptorsHumansLigandsMolecular ConformationMolecular Dynamics SimulationProtein BindingProtein Kinase InhibitorsQuantitative Structure-Activity RelationshipErbB ReceptorsLigandsProtein Kinase Inhibitorsdrug resistanceepidermal growth factorEpidermal Growth Factor ReceptorEpidermal Growth Factor Receptor mutantsmetaheuristicsmolecular dockingmulti-objective optimization

Identifiers

PMID27869781
PMCPMC6274512
OpenAlexW2550915940

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.