Evidence map›Paper›PMID 27868326›Full record

ArticleMolecular plant pathology2018

Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici.

Ethan L Stewart, Daniel Croll, Mark H Lendenmann, Andrea Sanchez-Vallet, Fanny E Hartmann, Javier Palma-Guerrero, Xin Ma, Bruce A McDonald

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
22.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Ethan L StewartPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
Daniel CrollPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
Mark H LendenmannPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
Andrea Sanchez-ValletPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
Fanny E HartmannPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
Javier Palma-GuerreroPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
Xin MaPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
Bruce A McDonaldPlant Pathology Group, ETH Zürich, Universitätstrasse 2, Zürich, 8092, Switzerland.
ETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted a comprehensive analysis of virulence in the fungal wheat pathogen Zymoseptoria tritici using quantitative trait locus (QTL) mapping. High-throughput phenotyping based on automated image analysis allowed the measurement of pathogen virulence on a scale and with a precision that was not previously possible. Across two mapping populations encompassing more than 520 progeny, 540 710 pycnidia were counted and their sizes and grey values were measured. A significant correlation was found between pycnidia size and both spore size and number. Precise measurements of percentage leaf area covered by lesions provided a quantitative measure of host damage. Combining these large and accurate phenotypic datasets with a dense panel of restriction site-associated DNA sequencing (RADseq) genetic markers enabled us to genetically dissect pathogen virulence into components related to host damage and those related to pathogen reproduction. We showed that different components of virulence can be under separate genetic control. Large- and small-effect QTLs were identified for all traits, with some QTLs specific to mapping populations, cultivars and traits and other QTLs shared among traits within the same mapping population. We associated the presence of four accessory chromosomes with small, but significant, increases in several virulence traits, providing the first evidence for a meaningful function associated with accessory chromosomes in this organism. A large-effect QTL involved in host specialization was identified on chromosome 7, leading to the identification of candidate genes having a large effect on virulence.

Indexed as

Chromosome MappingAllelesAscomycotaChromosomes, FungalGene Expression ProfilingGene Expression Regulation, FungalGenetic Association StudiesInheritance PatternsLod ScoreMolecular Sequence AnnotationPhenotypeQuantitative Trait LociTriticumVirulenceimage analysisMycosphaerella graminicolaQTL mappingquantitative virulenceZymoseptoria tritici

Identifiers

PMID27868326
PMCPMC6638037
OpenAlexW2750218814

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.