Evidence map›Paper›PMID 27867099›Full record

ReviewFree radical biology & medicine2017

Risky repair: DNA-protein crosslinks formed by mitochondrial base excision DNA repair enzymes acting on free radical lesions.

Rachel Audrey Caston, Bruce Demple

Abstract readReview
In one paragraph

Review in Free radical biology & medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Review
  3. Impact of NAD+ metabolism on ovarian aging.Immunity & ageing : I & A · 2023
    Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. The Role of Reactive Oxygen Species in the Life Cycle of the Mitochondrion.International journal of molecular sciences · 2020
    Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Oxidative DNA damage & repair: An introduction.Free radical biology & medicine · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Rachel Audrey CastonDepartment of Pharmacological Sciences, Stony Brook University School of Medicine, Stony Brook, NY 11794, USA.
Bruce DempleDepartment of Pharmacological Sciences, Stony Brook University School of Medicine, Stony Brook, NY 11794, USA. Electronic address: bruce.demple@stonybrook.edu.
Stony Brook University · US

Funding

The Ape1-NPM1 Axis and Telomere MaintenanceR21CA191856 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI DEMPLE, BRUCE F. · 2016 to 2017
$374k
Single- and multinucleotide base excision DNA repair pathways in vivoR21CA198752 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI DEMPLE, BRUCE F. · 2015 to 2016
$374k
NCI NIH HHS R21 CA191856NCI NIH HHS R21 CA198752
6 · The paper itself

Abstract

Oxygen is both necessary and dangerous for aerobic cell function. ATP is most efficiently made by the electron transport chain, which requires oxygen as an electron acceptor. However, the presence of oxygen, and to some extent the respiratory chain itself, poses a danger to cellular components. Mitochondria, the sites of oxidative phosphorylation, have defense and repair pathways to cope with oxidative damage. For mitochondrial DNA, an essential pathway is base excision repair, which acts on a variety of small lesions. There are instances, however, in which attempted DNA repair results in more damage, such as the formation of a DNA-protein crosslink trapping the repair enzyme on the DNA. That is the case for mitochondrial DNA polymerase γ acting on abasic sites oxidized at the 1-carbon of 2-deoxyribose. Such DNA-protein crosslinks presumably must be removed in order to restore function. In nuclear DNA, ubiquitylation of the crosslinked protein and digestion by the proteasome are essential first processing steps. How and whether such mechanisms operate on DNA-protein crosslinks in mitochondria remains to be seen.

Indexed as

DNA RepairDeoxyriboseDNA AdductsDNA DamageDNA Polymerase gammaFree RadicalsHumansMitochondriaOxidation-ReductionOxidative StressProteasome Endopeptidase ComplexUbiquitinationDeoxyriboseDNA AdductsDNA Polymerase gammaFree RadicalsProteasome Endopeptidase Complex2-deoxyribonolactoneAP lyaseDNA polymerase betaDNA polymerase gammaOxidized abasic sites

Identifiers

PMID27867099
PMCPMC5815828
OpenAlexW2552304421

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.