Evidence map›Paper›PMID 27865021›Full record

ArticleProtein science : a publication of the Protein Society2017

Ligand binding specificity of the Escherichia coli periplasmic histidine binding protein, HisJ.

Subrata Paul, Sambuddha Banerjee, Hans J Vogel

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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  7. Investigating the roles of the conserved CuJournal of inorganic biochemistry · 2020
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  9. Substrate recognition and ATPase activity of theThe Journal of biological chemistry · 2020
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Subrata PaulBiochemistry Research Group, Department of Biological Sciences, University of Calgary, Alberta, T2N 1N4, Canada.
Sambuddha BanerjeeBiochemistry Research Group, Department of Biological Sciences, University of Calgary, Alberta, T2N 1N4, Canada.
Hans J VogelBiochemistry Research Group, Department of Biological Sciences, University of Calgary, Alberta, T2N 1N4, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The HisJ protein from Escherichia coli and related Gram negative bacteria is the periplasmic component of a bacterial ATP-cassette (ABC) transporter system. Together these proteins form a transmembrane complex that can take up L-histidine from the environment and translocate it into the cytosol. We have studied the specificity of HisJ for binding L-His and many related naturally occurring compounds. Our data confirm that L-His is the preferred ligand, but that 1-methyl-L-His and 3-methyl-L-His can also bind, while the dipeptide carnosine binds weakly and D-histidine and the histidine degradation products, histamine, urocanic acid and imidazole do not bind. L-Arg, homo-L-Arg, and post-translationally modified methylated Arg-analogs also bind with reasonable avidity, with the exception of symmetric dimethylated-L-Arg. In contrast, L-Lys and L-Orn have considerably weaker interactions with HisJ and methylated and acetylated Lys variants show relatively poor binding. It was also observed that the carboxylate group of these amino acids and their variants was very important for proper recognition of the ligand. Taken together our results are a key step towards designing HisJ as a specific protein-based reagentless biosensor.

Indexed as

Escherichia coliEscherichia coli ProteinsHistidineLigandsPeriplasmic Binding ProteinsProtein BindingEscherichia coli ProteinsHistidinehistidine-binding proteinLigandsPeriplasmic Binding ProteinsbiosensorHisJligand bindingperiplasmic protein

Identifiers

PMID27865021
PMCPMC5275724

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.