Evidence map›Paper›PMID 27864876›Full record

ArticlePigment cell & melanoma research2017

Kinase gene fusions in defined subsets of melanoma.

Jacqueline Turner, Kasey Couts, Jamie Sheren, Siriwimon Saichaemchan, Witthawat Ariyawutyakorn, Izabela Avolio, Ethan Cabral, Magdelena Glogowska, Carol Amato, Steven Robinson and 11 more

Abstract read
In one paragraph

Article in Pigment cell & melanoma research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 57 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Melanoma with in-frame deletion of MAP2K1: a distinct molecular subtype of cutaneous melanoma mutually exclusive from BRAF, NRAS, and NF1 mutations.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  13. Article
  14. Review
  15. Melanomas with activating RAF1 fusions: clinical, histopathologic, and molecular profiles.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  16. Article
  17. The mutational landscape of mucosal melanoma.Seminars in cancer biology · 2020
    Review
  18. Review
  19. Article
  20. Targeted Genomic Profiling of Acral Melanoma.Journal of the National Cancer Institute · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 1 institution in 1 country.

Jacqueline TurnerDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Kasey CoutsDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Jamie SherenDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Siriwimon SaichaemchanDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Witthawat AriyawutyakornDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Izabela AvolioDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Ethan CabralDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Magdelena GlogowskaDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Carol AmatoDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Steven RobinsonDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Jennifer HintzscheDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Allison ApplegateDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Eric SeelenfreundDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Rita GonzalezDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Keith WellsDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Stacey BagbyDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
John TentlerDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Aik-Choon TanDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
Joshua WisellDepartment of Pathology, University of Colorado Denver, Aurora, CO, USA.
Marileila Varella-GarciaDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
William RobinsonDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, USA.
University of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
NCATS NIH HHS UL1 TR001082NCI NIH HHS P30 CA046934
6 · The paper itself

Abstract

Genomic rearrangements resulting in activating kinase fusions have been increasingly described in a number of cancers including malignant melanoma, but their frequency in specific melanoma subtypes has not been reported. We used break-apart fluorescence in situ hybridization (FISH) to identify genomic rearrangements in tissues from 59 patients with various types of malignant melanoma including acral lentiginous, mucosal, superficial spreading, and nodular. We identified four genomic rearrangements involving the genes BRAF, RET, and ROS1. Of these, three were confirmed by Immunohistochemistry (IHC) or sequencing and one was found to be an ARMC10-BRAF fusion that has not been previously reported in melanoma. These fusions occurred in different subtypes of melanoma but all in tumors lacking known driver mutations. Our data suggest gene fusions are more common than previously thought and should be further explored particularly in melanomas lacking known driver mutations.

Indexed as

AdultAgedAged, 80 and overArmadillo Domain ProteinsFemaleGene RearrangementHigh-Throughput Nucleotide SequencingHumansMaleMelanomaMiddle AgedOncogene Proteins, FusionProtein-Tyrosine KinasesProto-Oncogene ProteinsProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-retArmadillo Domain ProteinsBRAF protein, humanOncogene Proteins, FusionProtein-Tyrosine KinasesProto-Oncogene ProteinsProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-retROS1 protein, humanacralkinasemelanomapan-negativerearrangement

Identifiers

PMID27864876
PMCPMC5349025
OpenAlexW2553642816

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.