Evidence map›Paper›PMID 27864365›Full record

ArticleThe Journal of biological chemistry2016

NMR Investigation of Structures of G-protein Coupled Receptor Folding Intermediates.

Martin Poms, Philipp Ansorge, Luis Martinez-Gil, Simon Jurt, Daniel Gottstein, Katrina E Fracchiolla, Leah S Cohen, Peter Güntert, Ismael Mingarro, Fred Naider and 1 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. A Paradigm for Peptide Hormone-GPCR Analyses.Molecules (Basel, Switzerland) · 2020
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Martin PomsFrom the Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
Philipp AnsorgeFrom the Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
Luis Martinez-Gilthe Department of Biochemistry and Molecular Biology, ERI BioTecMed, University of Valencia, E-46100 Burjassot, Spain.
Simon JurtFrom the Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.
Daniel Gottsteinthe Institute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University Frankfurt, Max-von-Laue-Straße 9, 60438 Frankfurt am Main, Germany.
Katrina E Fracchiollathe Department of Chemistry, The College of Staten Island, City University of New York (CUNY), Staten Island, New York 10314, the Ph.D. Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, and.
Leah S Cohenthe Department of Chemistry, The College of Staten Island, City University of New York (CUNY), Staten Island, New York 10314, the Ph.D. Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, and.
Peter Güntertthe Institute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University Frankfurt, Max-von-Laue-Straße 9, 60438 Frankfurt am Main, Germany.
Ismael Mingarrothe Department of Biochemistry and Molecular Biology, ERI BioTecMed, University of Valencia, E-46100 Burjassot, Spain.
Fred Naiderthe Department of Chemistry, The College of Staten Island, City University of New York (CUNY), Staten Island, New York 10314, the Ph.D. Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, and.
Oliver ZerbeFrom the Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland, oliver.zerbe@chem.uzh.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Folding of G-protein coupled receptors (GPCRs) according to the two-stage model (Popot, J. L., and Engelman, D. M. (1990) Biochemistry 29, 4031-4037) is postulated to proceed in 2 steps: partitioning of the polypeptide into the membrane followed by diffusion until native contacts are formed. Herein we investigate conformational preferences of fragments of the yeast Ste2p receptor using NMR. Constructs comprising the first, the first two, and the first three transmembrane (TM) segments, as well as a construct comprising TM1-TM2 covalently linked to TM7 were examined. We observed that the isolated TM1 does not form a stable helix nor does it integrate well into the micelle. TM1 is significantly stabilized upon interaction with TM2, forming a helical hairpin reported previously (Neumoin, A., Cohen, L. S., Arshava, B., Tantry, S., Becker, J. M., Zerbe, O., and Naider, F. (2009) Biophys. J. 96, 3187-3196), and in this case the protein integrates into the hydrophobic interior of the micelle. TM123 displays a strong tendency to oligomerize, but hydrogen exchange data reveal that the center of TM3 is solvent exposed. In all GPCRs so-far structurally characterized TM7 forms many contacts with TM1 and TM2. In our study TM127 integrates well into the hydrophobic environment, but TM7 does not stably pack against the remaining helices. Topology mapping in microsomal membranes also indicates that TM1 does not integrate in a membrane-spanning fashion, but that TM12, TM123, and TM127 adopt predominantly native-like topologies. The data from our study would be consistent with the retention of individual helices of incompletely synthesized GPCRs in the vicinity of the translocon until the complete receptor is released into the membrane interior.

Indexed as

Amino Acid SequenceMicellesNuclear Magnetic Resonance, BiomolecularPeptide FragmentsProtein ConformationProtein DomainsReceptors, Mating FactorSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidMicellesPeptide FragmentsReceptors, Mating FactorSaccharomyces cerevisiae ProteinsSTE2 protein, S cerevisiaeG protein-coupled receptor (GPCR)membrane proteinnuclear magnetic resonance (NMR)protein foldingSte2pstructural biologyTopology

Identifiers

PMID27864365
PMCPMC5207146

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.