Evidence map›Paper›PMID 27862951›Full record

ArticleJournal of experimental zoology. Part B, Molecular and developmental evolution2016

Characterization and Evolution of the Spotted Gar Retina.

Joshua M Sukeena, Carlos A Galicia, Jacob D Wilson, Tim McGinn, Janette W Boughman, Barrie D Robison, John H Postlethwait, Ingo Braasch, Deborah L Stenkamp, Peter G Fuerst

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental zoology. Part B, Molecular and developmental evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Short-wavelength-sensitive 1 (Ecology and evolution · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Joshua M SukeenaDepartment of Biological Sciences, University of Idaho, Moscow, Idaho.
Carlos A GaliciaDepartment of Biological Sciences, University of Idaho, Moscow, Idaho.
Jacob D WilsonColorado School of Mines, Golden, Colorado.
Tim McGinnDepartment of Biological Sciences, University of Idaho, Moscow, Idaho.
Janette W BoughmanDepartment of Integrative Biology and Program in Ecology, Evolutionary Biology and Behavior, Michigan State University, East Lansing, Michigan.
Barrie D RobisonDepartment of Biological Sciences, University of Idaho, Moscow, Idaho.
John H PostlethwaitDepartment of Evolution, Development, and Genetics, University of Oregon, Eugene, Oregon.
Ingo BraaschDepartment of Integrative Biology and Program in Ecology, Evolutionary Biology and Behavior, Michigan State University, East Lansing, Michigan.
Deborah L StenkampDepartment of Biological Sciences, University of Idaho, Moscow, Idaho.
Peter G FuerstDepartment of Biological Sciences, University of Idaho, Moscow, Idaho.
University of Idaho · USMichigan State University · USColorado School of Mines · USUniversity of Oregon · USUniversity of Washington · US

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Carolyn Hovde Bohach · 2012 to 2026
$59.8M
ZEBRAFISH INTERNATIONAL RESOURCE CENTERP40RR012546 · NCRR · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 1998 to 2011
$21.9M
Patterning Genes in Retinal DevelopmentR01EY012146 · NEI · UNIVERSITY OF IDAHO · PI Deborah L Stenkamp · 2004 to 2026
$6.7M
Role of molecular recognition in retinal patterning and synaptic organizationR01EY020857 · NEI · UNIVERSITY OF IDAHO · PI FUERST, PETER GERARD · 2010 to 2014
$1.2M
NCRR NIH HHS P40 RR012546NEI NIH HHS R01 EY012146NEI NIH HHS R01 EY020857NIGMS NIH HHS P20 GM103408
6 · The paper itself

Abstract

In this study, we characterize the retina of the spotted gar, Lepisosteus oculatus, a ray-finned fish. Gar did not undergo the whole genome duplication event that occurred at the base of the teleost fish lineage, which includes the model species zebrafish and medaka. The divergence of gars from the teleost lineage and the availability of a high-quality genome sequence make it a uniquely useful species to understand how genome duplication sculpted features of the teleost visual system, including photoreceptor diversity. We developed reagents to characterize the cellular organization of the spotted gar retina, including representative markers for all major classes of retinal neurons and Müller glia. We report that the gar has a preponderance of predicted short-wavelength shifted (SWS) opsin genes, including a duplicated set of SWS1 (ultraviolet) sensitive opsin encoding genes, a SWS2 (blue) opsin encoding gene, and two rod opsin encoding genes, all of which were expressed in retinal photoreceptors. We also report that gar SWS1 cones lack the geometric organization of photoreceptors observed in teleost fish species, consistent with the crystalline photoreceptor mosaic being a teleost innovation. Of note the spotted gar expresses both exo-rhodopsin (RH1-1) and rhodopsin (RH1-2) in rods. Exo-rhodopsin is an opsin that is not expressed in the retina of zebrafish and other teleosts, but rather is expressed in regions of the brain. This study suggests that exo-rhodopsin is an ancestral actinopterygian (ray finned fish) retinal opsin, and in teleosts its expression has possibly been subfunctionalized to the pineal gland.

Indexed as

Evolution, MolecularAnimalsFishesOpsinsRetinaRetinal Cone Photoreceptor CellsRhodopsinRod OpsinsOpsinsRhodopsinRod Opsins

Identifiers

PMID27862951
PMCPMC5177532
OpenAlexW2556943311

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.