Evidence map›Paper›PMID 27861943›Full record

ArticleThe New phytologist2017

Respiration climacteric in tomato fruits elucidated by constraint-based modelling.

Sophie Colombié, Bertrand Beauvoit, Christine Nazaret, Camille Bénard, Gilles Vercambre, Sophie Le Gall, Benoit Biais, Cécile Cabasson, Mickaël Maucourt, Stéphane Bernillon and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 84 citations in OpenAlex.

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  14. Current Challenges in Plant Systems Biology.Advances in experimental medicine and biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Sophie ColombiéUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Bertrand BeauvoitUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Christine NazaretENSTBB-Institut Polytechnique de Bordeaux, Institut de Mathématiques de Bordeaux, 351 Cours de la Liberation, Talence, 33400, France.
Camille BénardUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Gilles VercambreUR 1115 Plantes et Systèmes de culture Horticoles, INRA, Avignon Cedex 9, F84914, France.
Sophie Le GallUR 1268 Biopolymères, Interactions, Assemblages, INRA, Nantes, F-44316, France.
Benoit BiaisUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Cécile CabassonUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Mickaël MaucourtUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Stéphane BernillonUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Annick MoingUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Martine Dieuaide-NoubhaniUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Jean-Pierre MazatUniversité de Bordeaux, 146 rue Léo-Saignat, Bordeaux Cedex, F-33076, France.
Yves GibonUMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave d'Ornon, F-33883, France.
Université de Bordeaux · FRBiologie du Fruit et Pathologie · FRBiopolymères Interactions Assemblages · FRInstitut Polytechnique de Bordeaux · FRPlantes et Système de Cultures Horticoles · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato is a model organism to study the development of fleshy fruit including ripening initiation. Unfortunately, few studies deal with the brief phase of accelerated ripening associated with the respiration climacteric because of practical problems involved in measuring fruit respiration. Because constraint-based modelling allows predicting accurate metabolic fluxes, we investigated the respiration and energy dissipation of fruit pericarp at the breaker stage using a detailed stoichiometric model of the respiratory pathway, including alternative oxidase and uncoupling proteins. Assuming steady-state, a metabolic dataset was transformed into constraints to solve the model on a daily basis throughout tomato fruit development. We detected a peak of CO

Indexed as

Models, BiologicalAdenosine TriphosphateCarbohydrate MetabolismCarbonCarbon DioxideCell RespirationFruitNitrogenSolanum lycopersicumStress, PhysiologicalSucroseThermogenesisTime FactorsAdenosine TriphosphateCarbonCarbon DioxideNitrogenSucrosecarbon allocationcentral metabolismconstraint-based modelenvironmental stressflux balance analysis (FBA)metabolic flux modellingrespiration climacterictomato fruit development

Identifiers

PMID27861943
PMCPMC6079640
OpenAlexW2553259743

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.