Evidence map›Paper›PMID 27861811›Full record

ArticleFEBS letters2016

The helical propensity of the extracellular loop is responsible for the substrate specificity of Fe(III)-phytosiderophore transporters.

Erisa Harada, Kenji Sugase, Kosuke Namba, Yoshiko Murata

Abstract readLetter
In one paragraph

Article in FEBS letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Erisa HaradaBioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.
Kenji SugaseBioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.
Kosuke NambaDepartment of Pharmaceutical Science, Tokushima University, Japan.
Yoshiko MurataBioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hordeum vulgare L. yellow stripe 1 (HvYS1) is a selective transporter of Fe(III)-phytosiderophores in barley that is responsible for iron acquisition from the soil. In contrast, maize Zea mays, yellow stripe 1 (ZmYS1) possesses broad substrate specificity. In this study, a quantitative evaluation of the transport activities of HvYS1 and ZmYS1 chimera proteins revealed that the seventh extracellular membrane loop is essential for substrate specificity. The loop peptides of both transporters were prepared and analysed by circular dichroism and NMR. The spectra revealed a higher propensity for α-helical conformation of the HvYS1 loop peptide and a largely disordered structure for that of ZmYS1. These structural differences are potentially responsible for the substrate specificities of the transporters.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceAnimalsBiological TransportHordeumIronMembrane Transport ProteinsOocytesPatch-Clamp TechniquesPlant ProteinsProtein DomainsProtein Structure, SecondaryRecombinant ProteinsSequence AlignmentSequence Homology, Amino AcidSiderophoresIronMembrane Transport ProteinsPlant ProteinsRecombinant ProteinsSiderophoresyellow stripe1 protein, Zea maysphytosiderophoreYS1 transporterα-helical content

Identifiers

PMID27861811
PMCPMC5216903

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.