Evidence map›Paper›PMID 27859906›Full record

ArticleHuman mutation2017

Human RECQ Helicase Pathogenic Variants, Population Variation and "Missing" Diseases.

Wenqing Fu, Alessio Ligabue, Kai J Rogers, Joshua M Akey, Raymond J Monnat

Abstract read
In one paragraph

Article in Human mutation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

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  16. DNA replication timing alterations identify common markers between distinct progeroid diseases.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Wenqing FuDepartment of Genome Sciences, University of Washington, Seattle, Washington.
Alessio LigabueDepartment of Pathology, University of Washington, Seattle, Washington.
Kai J RogersDepartment of Microbiology, University of Washington, Seattle, Washington.
Joshua M AkeyDepartment of Genome Sciences, University of Washington, Seattle, Washington.
Raymond J MonnatDepartment of Genome Sciences, University of Washington, Seattle, Washington.
University of Washington · US

Funding

Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI SIDOROVA, JULIA · 1999 to 2019
$26.0M
Statistical methods for inferring recent human demographic and evolutionary historyK99HG008122 · NHGRI · UNIVERSITY OF WASHINGTON · PI FU, WENQING · 2015 to 2016
$195k
NCI NIH HHS P01 CA077852NHGRI NIH HHS K99 HG008122
6 · The paper itself

Abstract

Heritable loss of function mutations in the human RECQ helicase genes BLM, WRN, and RECQL4 cause Bloom, Werner, and Rothmund-Thomson syndromes, cancer predispositions with additional developmental or progeroid features. In order to better understand RECQ pathogenic and population variation, we systematically analyzed genetic variation in all five human RECQ helicase genes. A total of 3,741 unique base pair-level variants were identified, across 17,605 potential mutation sites. Direct counting of BLM, RECQL4, and WRN pathogenic variants was used to determine aggregate and disease-specific carrier frequencies. The use of biochemical and model organism data, together with computational prediction, identified over 300 potentially pathogenic population variants in RECQL and RECQL5, the two RECQ helicases that are not yet linked to a heritable deficiency syndrome. Despite the presence of these predicted pathogenic variants in the human population, we identified no individuals homozygous for any biochemically verified or predicted pathogenic RECQL or RECQL5 variant. Nor did we find any individual heterozygous for known pathogenic variants in two or more of the disease-associated RECQ helicase genes BLM, RECQL4, or WRN. Several postulated RECQ helicase deficiency syndromes-RECQL or RECQL5 loss of function, or compound haploinsufficiency for the disease-associated RECQ helicases-may remain missing, as they likely incompatible with life.

Indexed as

Genetic Association StudiesGenetics, PopulationMutationComputational BiologyDatabases, Nucleic AcidDNA Mutational AnalysisGene FrequencyGenetic Predisposition to DiseaseGenotypeHumansRecQ HelicasesROC CurveSoftwareWeb BrowserRecQ HelicasesBloom syndromecompound haploinsufficiencyheritable cancer predispositionmutation functional predictionpathogenic variationRECQ helicaseRECQLRECQL5Rothmund-Thomson syndromeWerner syndrome

Identifiers

PMID27859906
PMCPMC5518694
OpenAlexW2556383328

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.