Evidence map›Paper›PMID 27859304›Full record

ReviewPhotochemistry and photobiology2017

From Mfd to TRCF and Back Again-A Perspective on Bacterial Transcription-coupled Nucleotide Excision Repair.

Alexandra M Deaconescu, Margaret M Suhanovsky

Abstract readReview
In one paragraph

Review in Photochemistry and photobiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. A Peek Inside the Machines of Bacterial Nucleotide Excision Repair.International journal of molecular sciences · 2021
    Review
  5. Review
  6. Article
  7. The DNA damage response to transcription stress.Nature reviews. Molecular cell biology · 2019
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Alexandra M DeaconescuDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI.
Margaret M SuhanovskyDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI.

Funding

Training CoreP20GM103430 · NIGMS · UNIVERSITY OF RHODE ISLAND · PI Bongsup P Cho · 2012 to 2026
$63.6M
MECHANISMS AND MACROMOLECULAR INTERACTIONS UNDERLYING CELLULAR RESPONSES TO STRESS SIGNALSR35GM144124 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI Alexandra M. Deaconescu · 2022 to 2026
$2.0M
Mechanisms for Stress-Induced Transcriptional Reprogramming via Anti-AdaptorsR01GM121975 · NIGMS · BROWN UNIVERSITY · PI DEACONESCU, ALEXANDRA M. · 2017 to 2021
$1.7M
NIGMS NIH HHS P20 GM103430NIGMS NIH HHS R01 GM121975NIGMS NIH HHS R35 GM144124
6 · The paper itself

Abstract

Photochemical and other reactions on DNA cause damage and corrupt genetic information. To counteract this damage, organisms have evolved intricate repair mechanisms that often crosstalk with other DNA-based processes such as transcription. Intriguing observations in the late 1980s and early 1990s led to the discovery of transcription-coupled repair (TCR), a subpathway of nucleotide excision repair. TCR, found in all domains of life, prioritizes for repair lesions located in the transcribed DNA strand, directly read by RNA polymerase. Here, we give a historical overview of developments in the field of bacterial TCR, starting from the pioneering work of Evelyn Witkin and Aziz Sancar, which led to the identification of the first transcription-repair coupling factor (the Mfd protein), to recent studies that have uncovered alternative TCR pathways and regulators.

Indexed as

DNA RepairTranscription, GeneticBacteriaBacterial ProteinsDNA, BacterialDNA DamageDNA-Directed RNA PolymerasesTemplates, GeneticTranscription FactorsBacterial ProteinsDNA, BacterialDNA-Directed RNA PolymerasesTranscription Factorstranscription repair coupling factor protein, Bacteria

Identifiers

PMID27859304
PMCPMC5672955

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.