Evidence map›Paper›PMID 27859052›Full record

ArticleFEBS letters2016

Hairpin structure stability plays a role in the activity of two antimicrobial peptides.

Kalkena Sivanesam, Brandon L Kier, Samuel D Whedon, Champak Chatterjee, Niels H Andersen

Open access · bronzeAbstract read
In one paragraph

Article in FEBS letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Peptide Designs for Use in Caries Management: A Systematic Review.International journal of molecular sciences · 2023
    Pooled it
  2. The rise and future of peptide-based antimicrobials.Journal of microbiology (Seoul, Korea) · 2026
    Review
  3. Article
  4. Small Natural Cyclic Peptides from DBAASP Database.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  5. Article
  6. A systematic analysis of the beta hairpin motif in the Protein Data Bank.Protein science : a publication of the Protein Society · 2021
    Article
  7. Article
  8. Biological consequences of improving the structural stability of hairpins that have antimicrobial activity.Journal of peptide science : an official publication of the European Peptide Society · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kalkena SivanesamDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Brandon L KierDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Samuel D WhedonDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Champak ChatterjeeDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Niels H AndersenDepartment of Chemistry, University of Washington, Seattle, WA, USA.
University of Washington · US

Funding

Chemical Strategies to Investigate Gene Regulation By Histone SumoylationR01GM110430 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK · 2014 to 2022
$2.5M
Exploring Protein Folding Landscapes by Circular PermutationR01GM099889 · NIGMS · UNIVERSITY OF WASHINGTON · PI ANDERSEN, NIELS HJORTH · 2012 to 2015
$1.0M
NIGMS NIH HHS R01 GM099889NIGMS NIH HHS R01 GM110430
6 · The paper itself

Abstract

Many naturally occurring antimicrobial peptides (AMPs) are amphipathic with a β-hairpin conformation stabilized by cross-strand disulfides across the associated β-strands. Here, we show that the disulfides are not essential. Other structuring means such as better β-turns and noncovalent cross-strand interactions can, with proper design, replace the disulfides with no loss in antimicrobial activity. Our results also demonstrate that the hairpin turn region may play a role in membrane recognition for at least one member of this class, since a homodimeric turnless β-sheet analog showed no antimicrobial activity. We also examined the effects of N-terminal fatty acid adducts on AMPs. Surprisingly, the large hydrophobic carboxylic moieties examined completely eliminated the antimicrobial activity of previously active β-hairpin peptides.

Indexed as

Amino Acid SequenceAntimicrobial Cationic PeptidesCorynebacterium glutamicumDisulfidesDNA-Binding ProteinsEscherichia coliMicrobial Sensitivity TestsPeptides, CyclicProtein StabilityProtein Structure, SecondaryStructure-Activity RelationshipAntimicrobial Cationic PeptidesDisulfidesDNA-Binding ProteinsgomesinPeptides, Cyclictachyplesin peptide, Tachypleus tridentatusantimicrobialgomesinhairpin peptidestachyplesin

Identifiers

PMID27859052
PMCPMC5578868
OpenAlexW2550880032

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.