Evidence map›Paper›PMID 27857159›Full record

ArticleScientific reports2016

Using community analysis to explore bacterial indicators for disease suppression of tobacco bacterial wilt.

Xiaojiao Liu, Shuting Zhang, Qipeng Jiang, Yani Bai, Guihua Shen, Shili Li, Wei Ding

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

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  12. Effects ofFrontiers in plant science · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaojiao LiuLaboratory of Natural Products Pesticides, College of Plant Protection, Southwest University, Chongqing, China.
Shuting ZhangLaboratory of Natural Products Pesticides, College of Plant Protection, Southwest University, Chongqing, China.
Qipeng JiangLaboratory of Natural Products Pesticides, College of Plant Protection, Southwest University, Chongqing, China.
Yani BaiLaboratory of Natural Products Pesticides, College of Plant Protection, Southwest University, Chongqing, China.
Guihua ShenLaboratory of Natural Products Pesticides, College of Plant Protection, Southwest University, Chongqing, China.
Shili LiLaboratory of Natural Products Pesticides, College of Plant Protection, Southwest University, Chongqing, China.
Wei DingLaboratory of Natural Products Pesticides, College of Plant Protection, Southwest University, Chongqing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although bacterial communities play important roles in the suppression of pathogenic diseases and crop production, little is known about the bacterial communities associated with bacterial wilt. Based on 16S rRNA gene sequencing, statistical analyses of microbial communities in disease-suppressive and disease-conducive soils from three districts during the vegetation period of tobacco showed that Proteobacteria was the dominant phylum, followed by Acidobacteria. Only samples from September were significantly correlated to disease factors. Fifteen indicators from taxa found in September (1 class, 2 orders, 3 families and 9 genera) were identified in the screen as being associated with disease suppression, and 10 of those were verified for potential disease suppression in March. Kaistobacter appeared to be the genus with the most potential for disease suppression. Elucidating microbially mediated natural disease suppression is fundamental to understanding microecosystem responses to sustainable farming and provides a possible approach for modeling disease-suppressive indicators. Here, using cluster analysis, MRPP testing, LEfSe and specific filters for a Venn diagram, we provide insight into identifying possible indicators of disease suppression of tobacco bacterial wilt.

Indexed as

Soil MicrobiologyBacteriaDisease ResistanceMicrobiotaMolecular TypingNicotianaPlant DiseasesRNA, BacterialRNA, Ribosomal, 16SSeasonsRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID27857159
PMCPMC5114674

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.