Evidence map›Paper›PMID 27857068›Full record

ArticleExperimental & molecular medicine2016

A phosphorylation pattern-recognizing antibody specifically reacts to RNA polymerase II bound to exons.

Jungwon Han, Jong-Hyuk Lee, Sunyoung Park, Soomin Yoon, Aerin Yoon, Do B Hwang, Hwa K Lee, Min S Kim, Yujean Lee, Won J Yang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Experimental & molecular medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Jungwon HanDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Jong-Hyuk LeeDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Sunyoung ParkDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Soomin YoonDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Aerin YoonDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Do B HwangCancer Research Institute, Seoul National University College of Medicine, Seoul, Republic of Korea.
Hwa K LeeDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Min S KimDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Yujean LeeDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Won J YangDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Hong-Duk YounDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Hyori KimAsan Institute for Life Sciences, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea.
Junho ChungDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul, Republic of Korea.
Seoul National University · KRAsan Medical Center · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The C-terminal domain of RNA polymerase II is an unusual series of repeated residues appended to the C-terminus of the largest subunit and serves as a flexible binding scaffold for numerous nuclear factors. The binding of these factors is determined by the phosphorylation patterns on the repeats in the domain. In this study, we generated a synthetic antibody library by replacing the third heavy chain complementarity-determining region of an anti-HER2 (human epidermal growth factor receptor 2) antibody (trastuzumab) with artificial sequences of 7-18 amino-acid residues. From this library, antibodies were selected that were specific to serine phosphopeptides that represent typical phosphorylation patterns on the functional unit (YSPTSPS)

Indexed as

ExonsAntibodiesChromatin ImmunoprecipitationHEK293 CellsHeLa CellsHumansPhosphorylationProtein BindingRNA Polymerase IIAntibodiesRNA Polymerase II

Identifiers

PMID27857068
PMCPMC5133369
OpenAlexW2554760115

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.