Evidence map›Paper›PMID 27856764›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Role of nucleotide-binding oligomerization domain 1 (NOD1) and its variants in human cytomegalovirus control in vitro and in vivo.

Yi-Hsin Fan, Sujayita Roy, Rupkatha Mukhopadhyay, Arun Kapoor, Priya Duggal, Genevieve L Wojcik, Robert F Pass, Ravit Arav-Boger

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Mutual regulations betweenFrontiers in immunology · 2024
    Review
  6. Article
  7. NOD1: a metabolic modulator.Frontiers in endocrinology · 2024
    Review
  8. Innate immune recognition against SARS-CoV-2.Inflammation and regeneration · 2023
    Review
  9. Review
  10. Article
  11. Frontiers in cellular and infection microbiology · 2022
    Article
  12. Article
  13. Review
  14. Mediators of Metabolism: An Unconventional Role for NOD1 and NOD2.International journal of molecular sciences · 2021
    Review
  15. Article
  16. Frontiers in immunology · 2021
    Article
  17. Article
  18. NOD2/c-Jun NHJournal of bacteriology · 2020
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yi-Hsin FanDivision of Infectious Diseases, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Sujayita RoyDivision of Infectious Diseases, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Rupkatha MukhopadhyayDivision of Infectious Diseases, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Arun KapoorDivision of Infectious Diseases, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21287.
Priya DuggalDepartment of Genetic Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21231.
Genevieve L WojcikDepartment of Genetic Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21231.
Robert F PassDivision of Infectious Diseases, Department of Pediatrics, University of Alabama at Birmingham, Birmingham, AL 35294.
Ravit Arav-BogerDivision of Infectious Diseases, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21287; boger@jhmi.edu.
Johns Hopkins University · USJohns Hopkins Medicine · USUniversity of Alabama at Birmingham · US

Funding

NHLBI NIH HHS N01 HV048195
6 · The paper itself

Abstract

Induction of nucleotide-binding oligomerization domain 2 (NOD2) and downstream receptor-interacting serine/threonine-protein kinase 2 (RIPK2) by human cytomegalovirus (HCMV) is known to up-regulate antiviral responses and suppress virus replication. We investigated the role of nucleotide-binding oligomerization domain 1 (NOD1), which also signals through RIPK2, in HCMV control. NOD1 activation by Tri-DAP (NOD1 agonist) suppressed HCMV and induced IFN-β. Mouse CMV was also inhibited through NOD1 activation. NOD1 knockdown (KD) or inhibition of its activity with small molecule ML130 enhanced HCMV replication in vitro. NOD1 mutations displayed differential effects on HCMV replication and antiviral responses. In cells overexpressing the E56K mutation in the caspase activation and recruitment domain, virus replication was enhanced, but in cells overexpressing the E266K mutation in the nucleotide-binding domain or the wild-type NOD1, HCMV was inhibited, changes that correlated with IFN-β expression. The interaction of NOD1 and RIPK2 determined the outcome of virus replication, as evidenced by enhanced virus growth in NOD1 E56K mutant cells (which failed to interact with RIPK2). NOD1 activities were executed through IFN-β, given that IFN-β KD reduced the inhibitory effect of Tri-DAP on HCMV. Signaling through NOD1 resulting in HCMV suppression was IKKα-dependent and correlated with nuclear translocation and phosphorylation of IRF3. Finally, NOD1 polymorphisms were significantly associated with the risk of HCMV infection in women who were infected with HCMV during participation in a glycoprotein B vaccine trial. Collectively, our data indicate a role for NOD1 in HCMV control via RIPK2- IKKα-IRF3 and suggest that its polymorphisms predict the risk of infection.

Indexed as

AnimalsCells, CulturedCytomegalovirusCytomegalovirus InfectionsFemaleGene ExpressionGenetic Association StudiesGenetic Predisposition to DiseaseHumansI-kappa B KinaseInterferon-betaInterferon Regulatory Factor-3Mice, Inbred BALB CNod1 Signaling Adaptor ProteinNod2 Signaling Adaptor ProteinPolymorphism, Single NucleotideI-kappa B KinaseInterferon-betaInterferon Regulatory Factor-3IRF3 protein, humanNOD1 protein, humanNod1 Signaling Adaptor ProteinNOD2 protein, humanNod2 Signaling Adaptor ProteinReceptor-Interacting Protein Serine-Threonine Kinase 2RIPK2 protein, humancytomegalovirusinnate immune responseNOD1polymorphismsRIPK2

Identifiers

PMID27856764
PMCPMC5137695
OpenAlexW2549487312

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.