Evidence map›Paper›PMID 27856734›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape.

Ruben Schep, Anamaria Necsulea, Eddie Rodríguez-Carballo, Isabel Guerreiro, Guillaume Andrey, Thi Hanh Nguyen Huynh, Virginie Marcet, Jozsef Zákány, Denis Duboule, Leonardo Beccari

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Using Organoids to Tap Mammary Gland Diversity for Novel Insight.Journal of mammary gland biology and neoplasia · 2024
    Review
  3. Article
  4. Sequential inGenes & development · 2021
    Article
  5. Article
  6. Review
  7. Article
  8. Regulatory Landscapes ofCirculation research · 2021
    Article
  9. Chromatin topology and the timing of enhancer function at theProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Mammalian-specific ectodermal enhancers control the expression ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. TheGenes & development · 2017
    Article
  15. Control of growth and gut maturation byProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ruben SchepDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland.
Anamaria NecsuleaSchool of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.
Eddie Rodríguez-CarballoDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland.
Isabel GuerreiroDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland.
Guillaume AndreySchool of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.
Thi Hanh Nguyen HuynhDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland.
Virginie MarcetDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland.
Jozsef ZákányDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland.
Denis DubouleDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland; denis.duboule@unige.ch.
Leonardo BeccariDepartment of Genetics and Evolution, University of Geneva,1211 Geneva, Switzerland.
University of Geneva · CHÉcole Polytechnique Fédérale de Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vertebrate Hox genes encode transcription factors operating during the development of multiple organs and structures. However, the evolutionary mechanism underlying this remarkable pleiotropy remains to be fully understood. Here, we show that Hoxd8 and Hoxd9, two genes of the HoxD complex, are transcribed during mammary bud (MB) development. However, unlike in other developmental contexts, their coexpression does not rely on the same regulatory mechanism. Hoxd8 is regulated by the combined activity of closely located sequences and the most distant telomeric gene desert. On the other hand, Hoxd9 is controlled by an enhancer-rich region that is also located within the telomeric gene desert but has no impact on Hoxd8 transcription, thus constituting an exception to the global regulatory logic systematically observed at this locus. The latter DNA region is also involved in Hoxd gene regulation in other contexts and strongly interacts with Hoxd9 in all tissues analyzed thus far, indicating that its regulatory activity was already operational before the appearance of mammary glands. Within this DNA region and neighboring a strong limb enhancer, we identified a short sequence conserved in therian mammals and capable of enhancer activity in the MBs. We propose that Hoxd gene regulation in embryonic MBs evolved by hijacking a preexisting regulatory landscape that was already at work before the emergence of mammals in structures such as the limbs or the intestinal tract.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsEnhancer Elements, GeneticGenes, HomeoboxHomeodomain ProteinsMammary Glands, AnimalMice, Inbred C57BLMice, Inbred CBAMice, TransgenicSequence Analysis, RNATranscription, GeneticHomeodomain Proteinsenhancersmammalian developmentmammary glandTAD

Identifiers

PMID27856734
PMCPMC5137715
OpenAlexW2554336516

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.