Evidence map›Paper›PMID 27856696›Full record

ArticleG3 (Bethesda, Md.)2017

The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion.

Rigzin Dekhang, Cheng Wu, Kristina M Smith, Teresa M Lamb, Matthew Peterson, Erin L Bredeweg, Oneida Ibarra, Jillian M Emerson, Nirmala Karunarathna, Anna Lyubetskaya and 7 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Rhythmic Nuclear Import Mediated by Importins Regulates thebioRxiv : the preprint server for biology · 2026
    Article
  4. Review
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  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The G-protein Coupled Receptor GPR8 Regulates Secondary Metabolism inFrontiers in bioengineering and biotechnology · 2020
    Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Rigzin DekhangDepartment of Biology, Texas A&M University, College Station, Texas 77843.
Cheng WuDepartment of Biology, Texas A&M University, College Station, Texas 77843.ORCID 0000-0001-6282-4476
Kristina M SmithDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331.
Teresa M LambDepartment of Biology, Texas A&M University, College Station, Texas 77843.
Matthew PetersonBioinformatics Program, Boston University, Massachusetts 02215.
Erin L BredewegDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331.
Oneida IbarraDepartment of Biology, Texas A&M University, College Station, Texas 77843.
Jillian M EmersonDepartment of Genetics, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire 03755.
Nirmala KarunarathnaDepartment of Biology, Texas A&M University, College Station, Texas 77843.
Anna LyubetskayaBioinformatics Program, Boston University, Massachusetts 02215.
Elham AziziBioinformatics Program, Boston University, Massachusetts 02215.
Jennifer M HurleyDepartment of Biological Sciences, Rensselaer Polytechnic Institute, Troy, New York 12180.
Jay C DunlapDepartment of Genetics, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire 03755.
James E GalaganBioinformatics Program, Boston University, Massachusetts 02215.
Michael FreitagDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331.
Matthew S SachsDepartment of Biology, Texas A&M University, College Station, Texas 77843.
Deborah Bell-PedersenDepartment of Biology, Texas A&M University, College Station, Texas 77843 dpedersen@bio.tamu.edu.ORCID 0000-0002-1639-8215
Texas A&M University · USBoston University · USOregon State University · USDartmouth College · USRensselaer Polytechnic Institute · US

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
Genetic and Molecular Dissection of the Neurospora ClockR35GM118021 · NIGMS · DARTMOUTH COLLEGE · PI Jay C. Dunlap · 2016 to 2026
$7.3M
Identification and Analysis of Circadian Clock-Controlled GenesR01GM083336 · NIGMS · DARTMOUTH COLLEGE · PI LOROS, JENNIFER J. · 2008 to 2015
$5.7M
GENETIC AND MOLECULAR DISSECTION OF THE NEUROSPORA CLOCKR01GM034985 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 1986 to 2015
$5.7M
Systems Biology of the Circadian Clock Output NetworkR01GM113673 · NIGMS · TEXAS A&M UNIVERSITY · PI BELL-PEDERSEN, DEBORAH, GALAGAN, JAMES E · 2015 to 2018
$1.6M
NIGMS NIH HHS P01 GM068087NIGMS NIH HHS R01 GM034985NIGMS NIH HHS R01 GM083336NIGMS NIH HHS R01 GM113673NIGMS NIH HHS R35 GM118021
6 · The paper itself

Abstract

Light and the circadian clock have a profound effect on the biology of organisms through the regulation of large sets of genes. Toward understanding how light and the circadian clock regulate gene expression, we used genome-wide approaches to identify the direct and indirect targets of the light-responsive and clock-controlled transcription factor ADV-1 in Neurospora crassa A large proportion of ADV-1 targets were found to be light- and/or clock-controlled, and enriched for genes involved in development, metabolism, cell growth, and cell fusion. We show that ADV-1 is necessary for transducing light and/or temporal information to its immediate downstream targets, including controlling rhythms in genes critical to somatic cell fusion. However, while ADV-1 targets are altered in predictable ways in Δadv-1 cells in response to light, this is not always the case for rhythmic target gene expression. These data suggest that a complex regulatory network downstream of ADV-1 functions to generate distinct temporal dynamics of target gene expression relative to the central clock mechanism.

Indexed as

Circadian ClocksCircadian RhythmFungal ProteinsGene Expression Regulation, FungalGene Regulatory NetworksGenome, FungalLightNeurospora crassaTranscription FactorsFungal ProteinsTranscription Factorscircadian clockdevelopmentphototransductionregulatory network

Identifiers

PMID27856696
PMCPMC5217103
OpenAlexW2551431730

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.