Evidence map›Paper›PMID 27856578›Full record

ArticleGenome announcements2016

Complete Genome Sequence of a Vaccinal Newcastle Disease Virus Strain Isolated from an Owl (Rhinoptynx clamator).

Steven Van Borm, Laís S Rizotto, Leila S Ullmann, Guilherme P Scagion, Camila D Malossi, Raphael M Simão, João P Araújo, Izabelle M Cordeiro, Lara B Keid, Trícia Maria F Sousa Oliveira and 5 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Steven Van BormMolecular Platform Unit, CODA-CERVA Veterinary and Agrochemical Research Centre, Brussels, Belgium.
Laís S RizottoPostgraduate Program in Experimental Epidemiology of Zoonoses, Faculty of Veterinary Medicine and Animal Science, University of São Paulo (FMVZ-USP), São Paulo, Brazil.
Leila S UllmannLaboratory of Animal and Human Virology, Department of Microbiology and Immunology, Biosciences Institute, Universidade Estadual Paulista, Botucatu, UNESP, São Paulo, Brazil.
Guilherme P ScagionPostgraduate Program in Experimental Epidemiology of Zoonoses, Faculty of Veterinary Medicine and Animal Science, University of São Paulo (FMVZ-USP), São Paulo, Brazil.
Camila D MalossiLaboratory of Animal and Human Virology, Department of Microbiology and Immunology, Biosciences Institute, Universidade Estadual Paulista, Botucatu, UNESP, São Paulo, Brazil.
Raphael M SimãoPostgraduate Program in Experimental Epidemiology of Zoonoses, Faculty of Veterinary Medicine and Animal Science, University of São Paulo (FMVZ-USP), São Paulo, Brazil.
João P AraújoLaboratory of Animal and Human Virology, Department of Microbiology and Immunology, Biosciences Institute, Universidade Estadual Paulista, Botucatu, UNESP, São Paulo, Brazil.
Izabelle M CordeiroPostgraduate Program in Experimental Epidemiology of Zoonoses, Faculty of Veterinary Medicine and Animal Science, University of São Paulo (FMVZ-USP), São Paulo, Brazil.
Lara B KeidDepartment of Veterinary Medicine, Faculty of Animal Science and Food Engineering, University of São Paulo (FZEA-USP), Pirassununga, Brazil.
Trícia Maria F Sousa OliveiraDepartment of Veterinary Medicine, Faculty of Animal Science and Food Engineering, University of São Paulo (FZEA-USP), Pirassununga, Brazil.
Rodrigo M SoaresPostgraduate Program in Experimental Epidemiology of Zoonoses, Faculty of Veterinary Medicine and Animal Science, University of São Paulo (FMVZ-USP), São Paulo, Brazil.
Matheus C MartiniLaboratory of Animal Virology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil.
Maria A OrsiNational Agricultural Laboratory of Brazil, Lanagro/São Paulo, Campinas, Brazil.
Clarice W ArnsLaboratory of Animal Virology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil.
Helena L FerreiraDepartment of Veterinary Medicine, Faculty of Animal Science and Food Engineering, University of São Paulo (FZEA-USP), Pirassununga, Brazil hlage@usp.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A Newcastle disease virus (NDV) was isolated in chicken embryonated eggs after detection by real-time reverse transcription-PCR (RRT-PCR) from a captive owl swab. The complete genome sequence of APMV-1/Rhinoptynx clamator/Brazil/22516/2009 (APMV-1, avian paramyxovirus type 1) was obtained using Illumina sequencing. Phylogenetic analysis of the complete genome classified the isolate within NDV class II genotype II.

Identifiers

PMID27856578
PMCPMC5114370

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.