Evidence map›Paper›PMID 27853269›Full record

ArticleScientific reports2016

Unraveling the association between genetic integrity and metabolic activity in pre-implantation stage embryos.

Fiona D'Souza, Shivanand M Pudakalakatti, Shubhashree Uppangala, Sachin Honguntikar, Sujith Raj Salian, Guruprasad Kalthur, Renu Pasricha, Divya Appajigowda, Hanudatta S Atreya, Satish Kumar Adiga

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Fiona D'SouzaDivision of Clinical Embryology, Centre of Excellence in Clinical Embryology, Kasturba Medical College, Manipal University, Manipal, India.
Shivanand M PudakalakattiNMR Research Centre Indian Institute of Science, Bengaluru, India.
Shubhashree UppangalaDivision of Clinical Embryology, Centre of Excellence in Clinical Embryology, Kasturba Medical College, Manipal University, Manipal, India.
Sachin HonguntikarDivision of Clinical Embryology, Centre of Excellence in Clinical Embryology, Kasturba Medical College, Manipal University, Manipal, India.
Sujith Raj SalianDivision of Clinical Embryology, Centre of Excellence in Clinical Embryology, Kasturba Medical College, Manipal University, Manipal, India.
Guruprasad KalthurDivision of Clinical Embryology, Centre of Excellence in Clinical Embryology, Kasturba Medical College, Manipal University, Manipal, India.
Renu PasrichaNational Centre For Biological Sciences, TIFR, Bengaluru, India.
Divya AppajigowdaNational Centre For Biological Sciences, TIFR, Bengaluru, India.
Hanudatta S AtreyaNMR Research Centre Indian Institute of Science, Bengaluru, India.
Satish Kumar AdigaDivision of Clinical Embryology, Centre of Excellence in Clinical Embryology, Kasturba Medical College, Manipal University, Manipal, India.
Kasturba Medical College, Manipal · INIndian Institute of Science Bangalore · INManipal Academy of Higher Education · INNational Centre for Biological Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Early development of certain mammalian embryos is protected by complex checkpoint systems to maintain the genomic integrity. Several metabolic pathways are modulated in response to genetic insults in mammalian cells. The present study investigated the relationship between the genetic integrity, embryo metabolites and developmental competence in preimplantation stage mouse embryos with the aim to identify early biomarkers which can predict embryonic genetic integrity using spent medium profiling by NMR spectroscopy. Embryos carrying induced DNA lesions (IDL) developed normally for the first 2.5 days, but began to exhibit a developmental delay at embryonic day 3.5(E3.5) though they were morphologically indistinguishable from control embryos. Analysis of metabolites in the spent medium on E3.5 revealed a significant association between pyruvate, lactate, glucose, proline, lysine, alanine, valine, isoleucine and thymine and the extent of genetic instability observed in the embryos on E4.5. Further analysis revealed an association of apoptosis and micronuclei frequency with P53 and Bax transcripts in IDL embryos on the E4.5 owing to delayed induction of chromosome instability. We conclude that estimation of metabolites on E3.5 in spent medium may serve as a biomarker to predict the genetic integrity in pre-implantation stage embryos which opens up new avenues to improve outcomes in clinical IVF programs.

Indexed as

ApoptosisEmbryonic DevelopmentGene Expression Regulation, DevelopmentalGenomic InstabilityAnimalsbcl-2-Associated X ProteinBlastocystFemaleMaleMiceMicronuclei, Chromosome-DefectiveTumor Suppressor Protein p53Bax protein, mousebcl-2-Associated X ProteinTumor Suppressor Protein p53

Identifiers

PMID27853269
PMCPMC5112559
OpenAlexW2552262423

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.