Evidence map›Paper›PMID 27852050›Full record

ArticleOncotarget2016

Identification of potential genes for human ischemic cardiomyopathy based on RNA-Seq data.

Wan Li, Liansheng Li, Shiying Zhang, Ce Zhang, Hao Huang, Yiran Li, Erqiang Hu, Gui Deng, Shanshan Guo, Yahui Wang and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Wan LiCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Liansheng LiCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Shiying ZhangCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Ce ZhangDepartment of internal medicine, Heilongjiang Commercial Hospital, Harbin, Heilongjiang, China.
Hao HuangCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Yiran LiCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Erqiang HuCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Gui DengCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Shanshan GuoCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Yahui WangCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Weimin LiDepartment of Cardiology, the First Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China.
Lina ChenCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang, China.
Harbin Medical University · CNFirst Affiliated Hospital of Harbin Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ischemic cardiomyopathy (ICM) is an important cause of heart failure, yet no ICM disease genes were stored in any public databases. Mutations of genes provided by RNA-Seq data could set a foundation for a variety of biological processes. This also made it possible to elucidate the mechanism and identify potential genes for ICM. In this paper, an integrated co-expression network was constructed using univariate and bivariate canonical correlation analysis for RNA-Seq data of human ICM samples. Three ICM-related modules were recognized after comparing between Pearson correlation coefficients of ICM samples and normal controls. Furthermore, 32 ICM potential genes were identified from ICM-related modules considering protein-protein interactions. Most of these genes were verified to be involved in ICM and diseases caused it by OMIM and literature. Our study could provide a novel perspective for potential gene identification and the pathogenesis for ICM and other complex diseases.

Indexed as

Sequence Analysis, RNACardiomyopathiesCase-Control StudiesComputational BiologyDatabases, GeneticGene Expression RegulationGene Regulatory NetworksGenetic Association StudiesGenetic MarkersGenetic Predisposition to DiseaseHumansMyocardial IschemiaPhenotypeProtein Interaction MapsRNASystems IntegrationGenetic MarkersRNAcanonical correlation analysisco-expression networkischemic cardiomyopathyPathology SectionRNA-Seq

Identifiers

PMID27852050
PMCPMC5347674
OpenAlexW2556082315

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.