Evidence map›Paper›PMID 27848120›Full record

ArticleCell stress & chaperones2017

Characterization of genes and pathways that respond to heat stress in Holstein calves through transcriptome analysis.

Krishnamoorthy Srikanth, Anam Kwon, Eunjin Lee, Hoyoung Chung

Open access · greenAbstract read
In one paragraph

Article in Cell stress & chaperones, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 115 citations in OpenAlex.

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  18. Climate Stressors and Physiological Dysregulations: Mechanistic Connections to Pathologies.International journal of environmental research and public health · 2023
    Review
  19. Article
  20. Genome-wide expression analysis reveals different heat shock responses in indigenous (Bos indicus) and crossbred (Bos indicus X Bos taurus) cattle.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Krishnamoorthy SrikanthAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Wanju, Jeollabuk-do, 565-851, Korea.
Anam KwonAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Wanju, Jeollabuk-do, 565-851, Korea.
Eunjin LeeAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Wanju, Jeollabuk-do, 565-851, Korea.
Hoyoung ChungAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Wanju, Jeollabuk-do, 565-851, Korea. chung133@korea.kr.ORCID 0000-0002-5205-193X
National Institute of Animal Science · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to investigate the genes and pathways that respond to heat stress in Holstein bull calves exposed to severe ranges of temperature and humidity. A total of ten animals from 4 to 6 months of age were subjected to heat stress at 37 °C and 90 % humidity for 12 h. Skin and rectal temperatures were measured before and after heat stress; while no correlation was found between them before heat stress, a moderate correlation was detected after heat stress, confirming rectal temperature to be a better barometer for monitoring heat stress. RNAseq analysis identified 8567 genes to be differentially regulated, out of which 465 genes were significantly upregulated (≥2-fold, P < 0.05) and 49 genes were significantly downregulated (≤2-fold, P < 0.05) in response to heat stress. Significant terms and pathways enriched in response to heat stress included chaperones, cochaperones, cellular response to heat stress, phosphorylation, kinase activation, immune response, apoptosis, Toll-like receptor signaling pathway, Pi3K/AKT activation, protein processing in endoplasmic reticulum, interferon signaling, pathways in cancer, estrogen signaling pathway, and MAPK signaling pathway. The differentially expressed genes were validated by quantitative real-time PCR analysis, which confirmed the tendency of the expression. The genes and pathways identified in this analysis extend our understanding of transcriptional response to heat stress and their likely functioning in adapting the animal to hyperthermic stress. The identified genes could be used as candidate genes for association studies to select and breed animals with improved heat tolerance.

Indexed as

Gene Expression ProfilingTranscriptomeAnimalsBody TemperatureCattleCluster AnalysisDown-RegulationFertilityGene Regulatory NetworksHeat-Shock ResponseImmune SystemMolecular ChaperonesPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-aktReal-Time Polymerase Chain ReactionRNAMolecular ChaperonesPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-aktRNATranscription FactorsDifferentially expressed genesHeat stressKEGGRNAseqTranscriptome

Identifiers

PMID27848120
PMCPMC5225057
OpenAlexW2555871875

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.