Evidence map›Paper›PMID 27847371›Full record

ArticleJournal of clinical microbiology2017

Sensitive Detection of Francisella tularensis Directly from Whole Blood by Use of the GeneXpert System.

Padmapriya P Banada, Srinidhi Deshpande, Soumitesh Chakravorty, Riccardo Russo, James Occi, Gabriel Meister, Kelly J Jones, Carl H Gelhaus, Michelle W Valderas, Martin Jones and 2 more

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. A simple and sensitive test forJournal of clinical microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Padmapriya P BanadaCenter for Emerging Pathogens, Department of Medicine, Rutgers Biomedical and Health Sciences (RHBS), Rutgers University, Newark, New Jersey, USA.
Srinidhi DeshpandeCenter for Emerging Pathogens, Department of Medicine, Rutgers Biomedical and Health Sciences (RHBS), Rutgers University, Newark, New Jersey, USA.
Soumitesh ChakravortyCenter for Emerging Pathogens, Department of Medicine, Rutgers Biomedical and Health Sciences (RHBS), Rutgers University, Newark, New Jersey, USA.
Riccardo RussoCenter for Emerging Pathogens, Department of Medicine, Rutgers Biomedical and Health Sciences (RHBS), Rutgers University, Newark, New Jersey, USA.
James OcciCenter for Emerging Pathogens, Department of Medicine, Rutgers Biomedical and Health Sciences (RHBS), Rutgers University, Newark, New Jersey, USA.
Gabriel MeisterBattelle Memorial Institute, Columbus, Ohio, USA.
Kelly J JonesBattelle Memorial Institute, Columbus, Ohio, USA.
Carl H GelhausBattelle Memorial Institute, Columbus, Ohio, USA.
Michelle W ValderasLovelace Respiratory Research Institute (LBERI), Albuquerque, New Mexico, USA.
Martin JonesCepheid, Sunnyvale, California, USA.
Nancy ConnellCenter for Emerging Pathogens, Department of Medicine, Rutgers Biomedical and Health Sciences (RHBS), Rutgers University, Newark, New Jersey, USA.
David AllandCenter for Emerging Pathogens, Department of Medicine, Rutgers Biomedical and Health Sciences (RHBS), Rutgers University, Newark, New Jersey, USA allandda@njms.rutgers.edu.
Rutgers, The State University of New Jersey · USBattelle · USLovelace Respiratory Research Institute · US

Funding

Supplement request for Ebola diagnostic assay developmentR01AI098713 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI ALLAND, DAVID · 2012 to 2016
$6.1M
Integrated Dual-Use Systems for Bio-Defense & Sepsis DiagnosisU01AI075490 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI ALLAND, DAVID · 2007 to 2010
$1.9M
NIAID NIH HHS R01 AI098713NIAID NIH HHS U01 AI075490
6 · The paper itself

Abstract

Francisella tularensis is a potential bioterrorism agent that is highly infectious at very low doses. Diagnosis of tularemia by blood culture and nucleic acid-based diagnostic tests is insufficiently sensitive. Here, we demonstrate a highly sensitive F. tularensis assay that incorporates sample processing and detection into a single cartridge suitable for point-of-care detection. The assay limit of detection (LOD) and dynamic range were determined in a filter-based cartridge run on the GeneXpert system. F. tularensis DNA in buffer or CFU of F. tularensis was spiked into human or macaque blood. To simulate detection in human disease, the assay was tested on blood drawn from macaques infected with F. tularensis Schu S4 at daily intervals. Assay detection was compared to that with a conventional quantitative PCR (qPCR) assay and blood culture. The assay LOD was 0.1 genome equivalents (GE) per reaction and 10 CFU/ml F. tularensis in both human and macaque blood. In infected macaques, the assay detected F. tularensis on days 1 to 4 postinfection in 21%, 17%, 60%, and 83% of macaques, respectively, compared to conventional qPCR positivity rates of 0%, 0%, 30%, and 100% and CFU detection of blood culture at 0%, 0%, 0%, and 10% positive, respectively. Assay specificity was 100%. The new cartridge-based assay can rapidly detect F. tularensis in bloodstream infections directly in whole blood at the early stages of infection with a sensitivity that is superior to that of other methods. The simplicity of the automated testing procedures may make this test suitable for rapid point-of-care detection.

Indexed as

AnimalsAutomation, LaboratoryBacteriological TechniquesBloodFrancisella tularensisHumansMacacaMolecular Diagnostic TechniquesSensitivity and SpecificityTularemiadiagnosticFrancisella tularensisGeneXpertmacaque bloodPCRwhole blood

Identifiers

PMID27847371
PMCPMC5228242
OpenAlexW2551557919

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.