Evidence map›Paper›PMID 27846223›Full record

ArticlePLoS genetics2016

Combgap Promotes Ovarian Niche Development and Chromatin Association of EcR-Binding Regions in BR-C.

Anna Hitrik, Malka Popliker, Dana Gancz, Zohar Mukamel, Aviezer Lifshitz, Omer Schwartzman, Amos Tanay, Lilach Gilboa

Abstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Stem Cell Niche Concept: Search for Current Expert Consensus.International journal of molecular sciences · 2025
    Review
  2. Review
  3. Review
  4. Article
  5. Direct and widespread role for the nuclear receptor EcR in mediating the response to ecdysone inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Global changes of H3K27me3 domains and Polycomb group protein distribution in the absence of recruiters Spps or Pho.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Anna HitrikDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-3919-9585
Malka PoplikerDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-1327-0312
Dana GanczDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.
Zohar MukamelDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-1623-9564
Aviezer LifshitzDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
Omer SchwartzmanDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-4122-8111
Amos TanayDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.
Lilach GilboaDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-9699-8594

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of niches for tissue-specific stem cells is an important aspect of stem cell biology. Determination of niche size and niche numbers during organogenesis involves precise control of gene expression. How this is achieved in the context of a complex chromatin landscape is largely unknown. Here we show that the nuclear protein Combgap (Cg) supports correct ovarian niche formation in Drosophila by controlling ecdysone-Receptor (EcR)- mediated transcription and long-range chromatin contacts in the broad locus (BR-C). Both cg and BR-C promote ovarian growth and the development of niches for germ line stem cells. BR-C levels were lower when Combgap was either reduced or over-expressed, indicating an intricate regulation of the BR-C locus by Combgap. Polytene chromosome stains showed that Cg co-localizes with EcR, the major regulator of BR-C, at the BR-C locus and that EcR binding to chromatin was sensitive to changes in Cg levels. Proximity ligation assay indicated that the two proteins could reside in the same complex. Finally, chromatin conformation analysis revealed that EcR-bound regions within BR-C, which span ~30 KBs, contacted each other. Significantly, these contacts were stabilized in an ecdysone- and Combgap-dependent manner. Together, these results highlight Combgap as a novel regulator of chromatin structure that promotes transcription of ecdysone target genes and ovarian niche formation.

Indexed as

Transcription, GeneticAnimalsChromatinDrosophila melanogasterDrosophila ProteinsEcdysoneFemaleGene Expression Regulation, DevelopmentalOrgan SpecificityOvaryPolytene ChromosomesReceptors, SteroidStem Cell NicheTranscription FactorsBr protein, Drosophilacg protein, DrosophilaChromatinDrosophila ProteinsEcdysoneecdysone receptorReceptors, SteroidTranscription Factors

Identifiers

PMID27846223
PMCPMC5147775

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.