Evidence map›Paper›PMID 27845418›Full record

ArticleScientific reports2016

Chikungunya virus infectivity, RNA replication and non-structural polyprotein processing depend on the nsP2 protease's active site cysteine residue.

Kai Rausalu, Age Utt, Tania Quirin, Finny S Varghese, Eva Žusinaite, Pratyush Kumar Das, Tero Ahola, Andres Merits

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 78 citations in OpenAlex.

  1. Expression and Purification of nsP2 Protease of Chikungunya Virus.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. PAGE-Based Measurements of nsP2 Protease Activity.Methods in molecular biology (Clifton, N.J.) · 2027
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  3. Article
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  6. Microbiology spectrum · 2026
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  19. A robust fluorogenic substrate for chikungunya virus protease (nsP2) activity.Protein science : a publication of the Protein Society · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Kai RausaluInstitute of Technology, University of Tartu, Tartu, Estonia.
Age UttInstitute of Technology, University of Tartu, Tartu, Estonia.
Tania QuirinDepartment of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Finny S VargheseDepartment of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Eva ŽusinaiteInstitute of Technology, University of Tartu, Tartu, Estonia.
Pratyush Kumar DasInstitute of Technology, University of Tartu, Tartu, Estonia.
Tero AholaDepartment of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Andres MeritsInstitute of Technology, University of Tartu, Tartu, Estonia.
University of Tartu · EEUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chikungunya virus (CHIKV), genus Alphavirus, family Togaviridae, has a positive-stand RNA genome approximately 12 kb in length. In infected cells, the genome is translated into non-structural polyprotein P1234, an inactive precursor of the viral replicase, which is activated by cleavages carried out by the non-structural protease, nsP2. We have characterized CHIKV nsP2 using both cell-free and cell-based assays. First, we show that Cys478 residue in the active site of CHIKV nsP2 is indispensable for P1234 processing. Second, the substrate requirements of CHIKV nsP2 are quite similar to those of nsP2 of related Semliki Forest virus (SFV). Third, substitution of Ser482 residue, recently reported to contribute to the protease activity of nsP2, with Ala has almost no negative effect on the protease activity of CHIKV nsP2. Fourth, Cys478 to Ala as well as Trp479 to Ala mutations in nsP2 completely abolished RNA replication in CHIKV and SFV trans-replication systems. In contrast, trans-replicases with Ser482 to Ala mutation were similar to wild type counterparts. Fifth, Cys478 to Ala as well as Trp479 to Ala mutations in nsP2 abolished the rescue of infectious virus from CHIKV RNA transcripts while Ser482 to Ala mutation had no effect. Thus, CHIKV nsP2 is a cysteine protease.

Indexed as

ProteolysisAmino Acid SubstitutionAnimalsCatalytic DomainCell LineChikungunya FeverChikungunya virusCricetinaeCysteine EndopeptidasesMutation, MissensePolyproteinsRNA, ViralViral ProteinsVirus ReplicationCysteine EndopeptidasesPolyproteinsRNA, ViralViral Proteins

Identifiers

PMID27845418
PMCPMC5109220
OpenAlexW2552155121

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.