Evidence map›Paper›PMID 27845367›Full record

ArticleScientific reports2016

Enhancement of protein production via the strong DIT1 terminator and two RNA-binding proteins in Saccharomyces cerevisiae.

Yoichiro Ito, Takao Kitagawa, Mamoru Yamanishi, Satoshi Katahira, Shingo Izawa, Kenji Irie, Makoto Furutani-Seiki, Takashi Matsuyama

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Systems Metabolic Engineering ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  3. Genetic tools for metabolic engineering ofEngineering microbiology · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Engineering the protein secretory pathway ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yoichiro ItoToyota Central R&D Labs. Inc., Nagakute, Aichi 480-1192, Japan.
Takao KitagawaSystems Biochemistry in Pathology and Regeneration, Yamaguchi University Graduate School of Medicine, Ube, Yamaguchi 755-8505, Japan.
Mamoru YamanishiToyota Central R&D Labs. Inc., Nagakute, Aichi 480-1192, Japan.
Satoshi KatahiraToyota Central R&D Labs. Inc., Nagakute, Aichi 480-1192, Japan.
Shingo IzawaLaboratory of Microbial Technology, Graduate School of Science and Technology, Kyoto Institute of Technology, Kyoto 606-8585, Japan.
Kenji IrieLaboratory of Molecular Cell Biology, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki 305-8575, Japan.
Makoto Furutani-SeikiSystems Biochemistry in Pathology and Regeneration, Yamaguchi University Graduate School of Medicine, Ube, Yamaguchi 755-8505, Japan.
Takashi MatsuyamaToyota Central R&D Labs. Inc., Nagakute, Aichi 480-1192, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Post-transcriptional upregulation is an effective way to increase the expression of transgenes and thus maximize the yields of target chemicals from metabolically engineered organisms. Refractory elements in the 3' untranslated region (UTR) that increase mRNA half-life might be available. In Saccharomyces cerevisiae, several terminator regions have shown activity in increasing the production of proteins by upstream coding genes; among these terminators the DIT1 terminator has the highest activity. Here, we found in Saccharomyces cerevisiae that two resident trans-acting RNA-binding proteins (Nab6p and Pap1p) enhance the activity of the DIT1 terminator through the cis element GUUCG/U within the 3'-UTR. These two RNA-binding proteins could upregulate a battery of cell-wall-related genes. Mutagenesis of the DIT1 terminator improved its activity by a maximum of 500% of that of the standard PGK1 terminator. Further understanding and improvement of this system will facilitate inexpensive and stable production of complicated organism-derived drugs worldwide.

Indexed as

3' Untranslated RegionsGene ExpressionTerminator Regions, GeneticHydroxymethyl and Formyl TransferasesRecombinant ProteinsRNA-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins3' Untranslated RegionsDIT1 protein, S cerevisiaeHydroxymethyl and Formyl TransferasesRecombinant ProteinsRNA-Binding ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID27845367
PMCPMC5109538

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.