Evidence map›Paper›PMID 27844244›Full record

ArticlePlant molecular biology2017

Metabolo-transcriptome profiling of barley reveals induction of chitin elicitor receptor kinase gene (HvCERK1) conferring resistance against Fusarium graminearum.

Shailesh Karre, Arun Kumar, Dhananjay Dhokane, Ajjamada C Kushalappa

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Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
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  10. Linking Multi-Omics to Wheat Resistance Types toInternational journal of molecular sciences · 2022
    Review
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  15. Review
  16. Full-Length Transcriptome ofMarine drugs · 2021
    Article
  17. Metabolomic Response of Tomatoes (Plants (Basel, Switzerland) · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shailesh KarreDepartment of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, H9X 3V9, Canada.
Arun KumarDepartment of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, H9X 3V9, Canada.
Dhananjay DhokaneDepartment of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, H9X 3V9, Canada.
Ajjamada C KushalappaDepartment of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, H9X 3V9, Canada. ajjamada.kushalappa@mcgill.ca.
McGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageWe report plausible disease resistance mechanisms induced by barley resistant genotype CI89831 against Fusarium head blight (FHB) based on metabolo-transcriptomics approach. We identified HvCERK1 as a candidate gene for FHB resistance, which is functional in resistant genotype CI9831 but non-functional in susceptible cultivars H106-371 and Zhedar-2. For the first time, we were able to show a hierarchy of regulatory genes that regulated downstream biosynthetic genes that eventually produced resistance related metabolites that reinforce the cell walls to contain the pathogen progress in plant. The HvCERK1 can be used for replacing in susceptible commercial cultivars, if non-functional, based on genome editing. Fusarium head blight (FHB) management is a great challenge in barley and wheat production worldwide. Though barley genome sequence and advanced omics technologies are available, till date none of the resistance mechanisms has been clearly deciphered. Hence, this study was aimed at identifying candidate gene(s) and elucidating resistance mechanisms induced by barley resistant genotype CI9831 based on integrated metabolomics and transcriptomics approach. Following Fusarium graminearum infection, we identified accumulation of specific set of induced secondary metabolites, belonging to phenylpropanoid, hydroxycinnamic acid (HCAA) and jasmonic acid pathways, and their biosynthetic genes. In association with these, receptor kinases such as chitin elicitor receptor kinase (HvCERK1) and protein kinases such as MAP kinase 3 (HvMPK3) and MAPK substrate 1 (HvMKS1), and transcription factors such as HvERF1/5, HvNAC42, HvWRKY23 and HvWRKY70 were also found upregulated with high fold change. Polymorphism studies across three barley genotypes confirmed the presence of mutations in HvCERK1 gene in two susceptible genotypes, isolating this gene as a potential candidate for FHB resistance. Further, the silencing of functional HvCERK1 gene in the resistant genotype CI9831, followed by gene expression and metabolite analysis revealed its role as an elicitor recognition receptor that triggered downstream regulatory genes, which in turn, regulated downstream metabolic pathway genes to biosynthesize resistance related (RR) metabolites to contain the pathogen to spikelet infection. A putative model on metabolic pathway regulation is proposed.

Indexed as

Amino Acid SequenceBiomassBiosynthetic PathwaysCell WallChitinComputer SimulationDisease ResistanceFlavonoidsFusariumGene Expression ProfilingGene Expression Regulation, PlantGene SilencingGenes, PlantGenotypeHordeumMAP Kinase Signaling System1-phenylpropanolChitinFlavonoidsPlant ProteinsPropanolsRNA, MessengerTranscription FactorsFusarium graminearumHvCERK1HvMKS1Hydroxycinnamic acid amides (HCAAs)Metabolo-transcriptomicsPhenylpropanoids

Identifiers

PMID27844244
OpenAlexW2552782178

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.