ArticleBMC genetics2016
Genetic diversity and population structure analysis to construct a core collection from a large Capsicum germplasm.
Article in BMC genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.
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Who cites it
56 citing papers in PubMed, 1 synthesis or guideline pooled it, 131 citations in OpenAlex.
- Scientific evolution and translational horizons of plant core germplasm: a global bibliometric synthesis and strategic insights.Frontiers in plant science · 2026Pooled it
- Scalable medium-density genotyping platforms for cultivar identification, pedigree authentication, marker-assisted and genomic selection, and other applications in strawberry.G3 (Bethesda, Md.) · 2026Article
- GWAS-informed genomic selection for cold tolerance in pepper (Capsicum annuum L.).BMC plant biology · 2026Article
- Digitalised phenotyping of pepper (Capsicum spp.) using effective RGB imaging and optimised camera positioning.Scientific reports · 2026Article
- Quantitative trait loci and genome-wide association study identifies novel loci for plant height in pepper (Frontiers in plant science · 2026Article
- Genome-wide assessment of genetic diversity and population structure of Capsicum in Southwestern Colombia using DArTseq markers.PloS one · 2026Article
- Pooled extreme-phenotype genome-wide association study XP-GWAS reveals an association betweenPeerJ · 2026Article
- Construction of a core collection of Notopterygii Rhizoma et Radix based on molecular phylogeography.BMC plant biology · 2025Article
- Genetic Diversity and Construction of Salt-Tolerant Core Germplasm in Maize (Plants (Basel, Switzerland) · 2025Article
- Transcriptome analysis provides new insights into the resistance of pepper to Phytophthora capsici infection.BMC genomics · 2025Article
- CountrywideFrontiers in plant science · 2025Article
- Integrated metabolome and transcriptome analysis provides clues to fruit color formation of yellow, orange, and red bell pepper.Scientific reports · 2024Article
- Exploring Genomic Regions Associated with Fruit Traits in Pepper: Insights from Multiple GWAS Models.International journal of molecular sciences · 2024Article
- Effects of Leaf Extracts from Genetic Resource ofPlants (Basel, Switzerland) · 2024Article
- Genome-Wide Analysis of Fruit Color and Carotenoid Content inPlants (Basel, Switzerland) · 2024Article
- Genetic diversity and population structure of wheat landraces in Southern Winter Wheat Region of China.BMC genomics · 2024Article
- Article
- Genetic profiles and phenotypic patterns in Taiwanese Phalaenopsis orchids: a two-step phenotype and genotype strategy using modified genetic distance algorithms.Frontiers in plant science · 2024Article
- A potential role of a special type of abortive seeds inFrontiers in plant science · 2024Article
- Genetic diversity, population structure, and phylogeny of insular Spanish pepper landraces (Frontiers in plant science · 2024Article
Corrections and comments
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundConservation of genetic diversity is an essential prerequisite for developing new cultivars with desirable agronomic traits. Although a large number of germplasm collections have been established worldwide, many of them face major difficulties due to large size and a lack of adequate information about population structure and genetic diversity. Core collection with a minimum number of accessions and maximum genetic diversity of pepper species and its wild relatives will facilitate easy access to genetic material as well as the use of hidden genetic diversity in Capsicum.
resultsTo explore genetic diversity and population structure, we investigated patterns of molecular diversity using a transcriptome-based 48 single nucleotide polymorphisms (SNPs) in a large germplasm collection comprising 3,821 accessions. Among the 11 species examined, Capsicum annuum showed the highest genetic diversity (H
conclusionsA total of 240 accessions were selected from 3,821 Capsicum accessions based on transcriptome-based 48 SNP markers with genome-wide distribution and 32 traits using a systematic approach. This core collection will be a primary resource for pepper breeders and researchers for further genetic association and functional analyses.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.