Evidence map›Paper›PMID 27840107›Full record

ArticleDevelopmental cell2016

Single-Cell Resolution of Temporal Gene Expression during Heart Development.

Daniel M DeLaughter, Alexander G Bick, Hiroko Wakimoto, David McKean, Joshua M Gorham, Irfan S Kathiriya, John T Hinson, Jason Homsy, Jesse Gray, William Pu and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 286 papers.

0numbers the graph read from it
0cells of the map it votes in
286citing papers in PubMed
24.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

286 citing papers in PubMed, 435 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. ELABELA Targets Mitochondria to Modulate Heart Development.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  9. Review
  10. Review
  11. Article
  12. Multiple pathways of CD34Cell death and differentiation · 2026
    Article
  13. Review
  14. Article
  15. MicroRNAs and Their Profiling via Single-Cell Sequencing Technologies.Methods in molecular biology (Clifton, N.J.) · 2026
    Review
  16. Review
  17. Article
  18. Expression of Netrin-1 in the developing mouse heart.Gene expression patterns : GEP · 2025
    Article
  19. 3D Bioprinting Functional Engineered Heart Tissues.International journal of molecular sciences · 2025
    Review
  20. Article

226 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Daniel M DeLaughterDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Alexander G BickDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Hiroko WakimotoDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
David McKeanDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Joshua M GorhamDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Irfan S KathiriyaGladstone Institute of Cardiovascular Disease, San Francisco, CA 94158, USA; Department of Anesthesia and Perioperative Care, University of California, San Francisco, San Francisco, CA 92868, USA.
John T HinsonDivision of Cardiovascular Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA.
Jason HomsyDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Jesse GrayDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
William PuDepartment of Cardiology, Harvard Medical School, Boston Children's Hospital, Boston, MA 02115, USA; Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA.
Benoit G BruneauGladstone Institute of Cardiovascular Disease, San Francisco, CA 94158, USA; Department of Pediatrics, Cardiovascular Research Institute, University of California, San Francisco, San Francisco, CA 94158, USA.
J G SeidmanDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Christine E SeidmanDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA; Cardiovascular Division, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, MA 02115, USA. Electronic address: cseidman@genetics.med.harvard.edu.
Harvard University · USBrigham and Women's Hospital · USUniversity of California, San Francisco · USBoston Children's Hospital · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
MULTIDISCIPLINARY RESEARCH TRAINING IN CARDIOLOGYT32HL007208 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Patrick Thomas Ellinor, David E Sosnovik · 1985 to 2026
$16.1M
GENOMICS OF CARDIOVASCULAR DEVELOPMENT, ADAPTIONU01HL066582 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI SEIDMAN, JONATHAN G · 2000 to 2004
$14.9M
The Epigenetic Landscape of Heart DevelopmentU01HL098179 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BOYER, LAURIE A, BRUNEAU, BENOIT GAETAN · 2009 to 2014
$10.0M
Mapping Transcriptional Networks in Cardiac DevelopmentU01HL098166 · NHLBI · HARVARD MEDICAL SCHOOL · PI SEIDMAN, JONATHAN G · 2009 to 2014
$9.5M
Defining Pathways from Gene Mutation to Heart FailureR01HL080494 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CHEN, CHRISTOPHER S, SEIDMAN, CHRISTINE E · 2005 to 2024
$9.4M
Genomic Effects on Right Ventricular Function, Clinical Features and Outcomes in CHDU01HL098147 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI NEWBURGER, JANE W., ROBERTS, AMY E · 2009 to 2024
$6.7M
Molecular Signaling in Hypertrophic CardiomyopathyR01HL084553 · NHLBI · HARVARD MEDICAL SCHOOL · PI SEIDMAN, JONATHAN G · 2007 to 2022
$5.9M
The Epigenetic Landscape of Heart DevelopmentUM1HL098179 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN, POLLARD, KATHERINE S. · 2015 to 2019
$4.7M
Regulation of Cardiac Development in Health and DiseaseUM1HL098166 · NHLBI · HARVARD MEDICAL SCHOOL · PI PENNACCHIO, LEN ALEXANDER, PU, WILLIAM TSWENCHING · 2015 to 2019
$4.4M
The algorithms used by the genome to interpret neural activityR01MH101528 · NIMH · HARVARD MEDICAL SCHOOL · PI GRAY, JESSE MICHAEL · 2013 to 2017
$2.7M
The Genomic Basis of Congenital Heart Disease and Neurodevelopmental OutcomesUM1HL098147 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI NEWBURGER, JANE W., ROBERTS, AMY E · 2015 to 2019
$2.4M
Howard Hughes Medical InstituteNHLBI NIH HHS K08 HL125807NHLBI NIH HHS R01 HL080494NHLBI NIH HHS R01 HL084553NHLBI NIH HHS T32 HL007208NHLBI NIH HHS U01 HL066582NHLBI NIH HHS U01 HL098147NHLBI NIH HHS U01 HL098166NHLBI NIH HHS U01 HL098179NHLBI NIH HHS UM1 HL098147NHLBI NIH HHS UM1 HL098166NHLBI NIH HHS UM1 HL098179NIGMS NIH HHS T32 GM007753NIMH NIH HHS R01 MH101528
6 · The paper itself

Abstract

Activation of complex molecular programs in specific cell lineages governs mammalian heart development, from a primordial linear tube to a four-chamber organ. To characterize lineage-specific, spatiotemporal developmental programs, we performed single-cell RNA sequencing of >1,200 murine cells isolated at seven time points spanning embryonic day 9.5 (primordial heart tube) to postnatal day 21 (mature heart). Using unbiased transcriptional data, we classified cardiomyocytes, endothelial cells, and fibroblast-enriched cells, thus identifying markers for temporal and chamber-specific developmental programs. By harnessing these datasets, we defined developmental ages of human and mouse pluripotent stem-cell-derived cardiomyocytes and characterized lineage-specific maturation defects in hearts of mice with heterozygous mutations in Nkx2.5 that cause human heart malformations. This spatiotemporal transcriptome analysis of heart development reveals lineage-specific gene programs underlying normal cardiac development and congenital heart disease.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell DifferentiationCell LineageEndothelial CellsFibroblastsGene Expression ProfilingHaploinsufficiencyHeartHeart AtriaHeart VentriclesHomeobox Protein Nkx-2.5HumansMiceMyocytes, CardiacSequence Analysis, RNAHomeobox Protein Nkx-2.5Nkx2-5 protein, mouseatriacardiogenesiscardiomyocyte maturationECMheartNkx2.5RNA-seqsingle cellventricle

Identifiers

PMID27840107
PMCPMC5198784
OpenAlexW2556548281

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.