Evidence map›Paper›PMID 27838629›Full record

ArticleGenetics2017

Drift Barriers to Quality Control When Genes Are Expressed at Different Levels.

Kun Xiong, Jay P McEntee, David J Porfirio, Joanna Masel

Abstract read
In one paragraph

Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Highly Abundant Proteins Are Highly Thermostable.Genome biology and evolution · 2023
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kun XiongDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, Arizona 85721.ORCID 0000-0003-1431-6586
Jay P McEnteeDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721.ORCID 0000-0002-1213-9734
David J PorfirioDepartment of Computer Science, University of Arizona, Tucson, Arizona 85721.ORCID 0000-0001-5383-3266
Joanna MaselDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721 masel@emailarizona.edu.ORCID 0000-0002-7398-2127

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression is imperfect, sometimes leading to toxic products. Solutions take two forms: globally reducing error rates, or ensuring that the consequences of erroneous expression are relatively harmless. The latter is optimal, but because it must evolve independently at so many loci, it is subject to a stringent "drift barrier"-a limit to how weak the effects of a deleterious mutation s can be, while still being effectively purged by selection, expressed in terms of the population size N of an idealized population such that purging requires s < -1/N In previous work, only large populations evolved the optimal local solution, small populations instead evolved globally low error rates, and intermediate populations were bistable, with either solution possible. Here, we take into consideration the fact that the effectiveness of purging varies among loci, because of variation in gene expression level, and variation in the intrinsic vulnerabilities of different gene products to error. The previously found dichotomy between the two kinds of solution breaks down, replaced by a gradual transition as a function of population size. In the extreme case of a small enough population, selection fails to maintain even the global solution against deleterious mutations, explaining the nonmonotonic relationship between effective population size and transcriptional error rate that was recently observed in experiments on Escherichia coli, Caenorhabditis elegans, and Buchnera aphidicola.

Indexed as

Evolution, MolecularGene ExpressionGenetic DriftModels, GeneticAnimalsBiological EvolutionBuchneraCaenorhabditis elegansEscherichia coliModels, StatisticalMutationPopulation DensitySelection, GeneticTranscription FactorsTranscription Factorscryptic genetic variationevolvabilityproofreadingrobustnessstop codon readthroughtranscriptional errors

Identifiers

PMID27838629
PMCPMC5223517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.