Evidence map›Paper›PMID 27836975›Full record

ArticleThe Journal of biological chemistry2016

A Conserved Tripeptide Sequence at the C Terminus of the Poxvirus DNA Processivity Factor D4 Is Essential for Protein Integrity and Function.

Manunya Nuth, Hancheng Guan, Robert P Ricciardi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Manunya NuthFrom the Department of Microbiology, School of Dental Medicine and.ORCID 0000-0002-3457-8201
Hancheng GuanFrom the Department of Microbiology, School of Dental Medicine and.
Robert P RicciardiFrom the Department of Microbiology, School of Dental Medicine and ricciard@upenn.edu.
University of Dental Medicine · MMUniversity of Pennsylvania · US

Funding

DEVELOPMENT OF TOPICAL ANTIVIRAL AGENTS FOR TREATING MOLLUSCUM CONTAGIOSUMR44AI125005 · NIAID · FOX CHASE CHEMICAL DIVERSITY CENTER, INC · PI SCOTT, RICHARD W · 2016 to 2018
$3.0M
Development of Small Molecule Therapeutics Against Smallpox and Other PoxvirusesR44AI115759 · NIAID · FOX CHASE CHEMICAL DIVERSITY CENTER, INC · PI SCOTT, RICHARD W · 2015 to 2016
$2.3M
NIAID NIH HHS R44 AI115759NIAID NIH HHS R44 AI125005
6 · The paper itself

Abstract

Vaccinia virus (VACV) is a poxvirus, and the VACV D4 protein serves both as a uracil-DNA glycosylase and as an essential component required for processive DNA synthesis. The VACV A20 protein has no known catalytic function itself but associates with D4 to form the D4-A20 heterodimer that functions as the poxvirus DNA processivity factor. The heterodimer enables the DNA polymerase to efficiently synthesize extended strands of DNA. Upon characterizing the interaction between D4 and A20, we observed that the C terminus of D4 is susceptible to perturbation. Further analysis demonstrated that a conserved hexapeptide stretch at the extreme C terminus of D4 is essential for maintaining protein integrity, as assessed by its requirement for the production of soluble recombinant protein that is functional in processive DNA synthesis. From the known crystal structures of D4, the C-terminal hexapeptide is shown to make intramolecular contact with residues spanning the inner core of the protein. Our mutational analysis revealed that a tripeptide motif (

Indexed as

Amino Acid SequenceCrystallography, X-RayDNA-Directed DNA PolymeraseDNA ReplicationDNA, ViralModels, MolecularMutagenesis, Site-DirectedMutationPeptide FragmentsPoxviridaeProtein ConformationProtein DomainsSequence Homology, Amino AcidUracil-DNA GlycosidaseViral ProteinsDNA-Directed DNA PolymeraseDNA, ViralPeptide FragmentsUracil-DNA GlycosidaseViral ProteinsDNA virusesNMRpoxvirusprocessivityprotein-protein interactionsurface plasmon resonance (SPR)viral replication

Identifiers

PMID27836975
PMCPMC5207139
OpenAlexW2553039137

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.