Evidence map›Paper›PMID 27836840›Full record

ArticleApplied and environmental microbiology2017

Three-Dimensional Structure of the Ultraoligotrophic Marine Bacterium "Candidatus Pelagibacter ubique".

Xiaowei Zhao, Cindi L Schwartz, Jason Pierson, Stephen J Giovannoni, J Richard McIntosh, Daniela Nicastro

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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  11. Microbial Sources of Exocellular DNA in the Ocean.Applied and environmental microbiology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Bacterial secretins: Mechanisms of assembly and membrane targeting.Protein science : a publication of the Protein Society · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiaowei ZhaoDepartments of Cell Biology and Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Cindi L SchwartzDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA.
Jason PiersonDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA.
Stephen J GiovannoniDepartment of Microbiology, Oregon State University, Corvallis, Oregon, USA.
J Richard McIntoshDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA.
Daniela NicastroDepartments of Cell Biology and Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, USA daniela.nicastro@utsouthwestern.edu.

Funding

WORKSHOPS AND TRAINING FOR IMAGE ANALYSIS USING IMODP41RR000592 · NCRR · UNIVERSITY OF COLORADO AT BOULDER · PI FELDHEIM, DAN L. · 1985 to 2011
$11.9M
MICROTUBULE POLYMERIZATION AND DYNAMICS IN VIVOR01GM033787 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI MCINTOSH, JOHN RICHARD · 1985 to 2017
$6.5M
NCRR NIH HHS P41 RR000592NIGMS NIH HHS R01 GM033787
6 · The paper itself

Abstract

SAR11 bacteria are small, heterotrophic, marine alphaproteobacteria found throughout the oceans. They thrive at the low nutrient concentrations typical of open ocean conditions, although the adaptations required for life under those conditions are not well understood. To illuminate this issue, we used cryo-electron tomography to study "Candidatus Pelagibacter ubique" strain HTCC1062, a member of the SAR11 clade. Our results revealed its cellular dimensions and details of its intracellular organization. Frozen-hydrated cells, which were preserved in a life-like state, had an average cell volume (enclosed by the outer membrane) of 0.037 ± 0.011 μm IMPORTANCE: Bacterioplankton of the SAR11 clade (Pelagibacterales) are of interest because of their global biogeochemical significance and because they appear to have been molded by unusual evolutionary circumstances that favor simplicity and efficiency. They have adapted to an ecosystem in which nutrient concentrations are near the extreme limits at which transport systems can function adequately, and they have evolved streamlined genomes to execute only functions essential for life. However, little is known about the actual size limitations and cellular features of living oligotrophic ultramicrobacteria. In this study, we have used cryo-electron tomography to obtain accurate physical information about the cellular architecture of "Candidatus Pelagibacter ubique," the first cultivated member of the SAR11 clade. These results provide foundational information for answering questions about the cell architecture and functions of these ultrasmall oligotrophic bacteria.

Indexed as

AlphaproteobacteriaElectron Microscope TomographySeawatercryo-electron tomographyPilQSAR11type IV piliultramicrobacteria

Identifiers

PMID27836840
PMCPMC5244296

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.