Evidence map›Paper›PMID 27835942›Full record

ArticleVirology journal2016

Detection of a novel circovirus PCV3 in pigs with cardiac and multi-systemic inflammation.

Tung Gia Phan, Federico Giannitti, Stephanie Rossow, Douglas Marthaler, Todd P Knutson, Linlin Li, Xutao Deng, Talita Resende, Fabio Vannucci, Eric Delwart

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Virology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 230 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
230citing papers in PubMed, 2 pooled it
49.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

230 citing papers in PubMed, 2 syntheses or guidelines pooled it, 418 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Construction andMicrobiology spectrum · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

170 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Tung Gia PhanBlood Systems Research Institute, San Francisco, CA, 94118, USA.
Federico GiannittiVeterinary Diagnostic Laboratory, University of Minnesota, Saint Paul, MN, 55108, USA.
Stephanie RossowVeterinary Diagnostic Laboratory, University of Minnesota, Saint Paul, MN, 55108, USA.
Douglas MarthalerVeterinary Diagnostic Laboratory, University of Minnesota, Saint Paul, MN, 55108, USA.
Todd P KnutsonVeterinary Diagnostic Laboratory, University of Minnesota, Saint Paul, MN, 55108, USA.
Linlin LiBlood Systems Research Institute, San Francisco, CA, 94118, USA.
Xutao DengBlood Systems Research Institute, San Francisco, CA, 94118, USA.
Talita ResendeVeterinary Diagnostic Laboratory, University of Minnesota, Saint Paul, MN, 55108, USA.
Fabio VannucciVeterinary Diagnostic Laboratory, University of Minnesota, Saint Paul, MN, 55108, USA.
Eric DelwartBlood Systems Research Institute, San Francisco, CA, 94118, USA. delwarte@medicine.ucsf.edu.
University of Minnesota · USUniversity of California, San Francisco · USBlood Systems Research Institute · US

Funding

Metagenomic detection of emerging viruses in the blood supplyR01HL105770 · NHLBI · VITALANT · PI DELWART, ERIC L · 2011 to 2015
$2.4M
NHLBI NIH HHS R01 HL105770
6 · The paper itself

Abstract

backgroundPorcine circovirus 2 causes different clinical syndromes resulting in a significant economic loss in the pork industry. Three pigs with unexplained cardiac and multi-organ inflammation that tested negative for PCV2 and other known porcine pathogens were further analyzed.

methodsHistology was used to identify microscopic lesions in multiple tissues. Metagenomics was used to detect viral sequences in tissue homogenates. In situ hybridization was used to detect viral RNA expression in cardiac tissue.

resultsIn all three cases we characterized the genome of a new circovirus we called PCV3 with a replicase and capsid proteins showing 55 and 35 % identities to the genetically-closest proteins from a bat-feces associated circovirus and were even more distant to those of porcine circovirus 1 and 2. Common microscopic lesions included non-suppurative myocarditis and/or cardiac arteriolitis. Viral mRNA was detected intralesionally in cardiac cells. Deep sequencing in tissues also revealed the presence of porcine astrovirus 4 in all three animals as well as rotavirus A, porcine cytomegalovirus and porcine hemagglutinating encephalomyelitis virus in individual cases.

conclusionThe pathogenicity and molecular epidemiology of this new circovirus, alone or in the context of co-infections, warrants further investigations.

Indexed as

AnimalsCircoviridae InfectionsCircovirusHistocytochemistryIn Situ HybridizationMetagenomicsMicroscopySwineSwine DiseasesArteriolitisCircovirusMetagenomicsMyocarditisPigVasculitis

Identifiers

PMID27835942
PMCPMC5105309
OpenAlexW2549196812

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.