Evidence map›Paper›PMID 27835581›Full record

ArticleOncotarget2016

Regulatory landscape and clinical implication of MBD3 in human malignant glioma.

Yi Cui, Jian Li, Ling Weng, Sara E Wirbisky, Jennifer L Freeman, Jingping Liu, Qing Liu, Xianrui Yuan, Joseph Irudayaraj

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yi CuiDepartment of Neurosurgery, Xiangya Hospital of Central South University, Changsha, Hunan 410008, China.
Jian LiDepartment of Neurosurgery, Xiangya Hospital of Central South University, Changsha, Hunan 410008, China.
Ling WengDepartment of Neurology, Xiangya Hospital of Central South University, Changsha, Hunan 410008, China.
Sara E WirbiskySchool of Health Sciences, Purdue University, West Lafayette, IN 47907, USA.
Jennifer L FreemanSchool of Health Sciences, Purdue University, West Lafayette, IN 47907, USA.
Jingping LiuDepartment of Neurosurgery, Xiangya Hospital of Central South University, Changsha, Hunan 410008, China.
Qing LiuDepartment of Neurosurgery, Xiangya Hospital of Central South University, Changsha, Hunan 410008, China.
Xianrui YuanDepartment of Neurosurgery, Xiangya Hospital of Central South University, Changsha, Hunan 410008, China.
Joseph IrudayarajBiological Engineering and Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA.
Xiangya Hospital Central South University · CNPurdue University West Lafayette · USCentral South University · CN

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI John Tesmer · 1985 to 2026
$43.4M
NCI NIH HHS P30 CA023168
6 · The paper itself

Abstract

In this article we inspect the roles and functions of the methyl-CpG-binding domain protein 3 (MBD3) in human malignant glioma, to assess its potential as an epigenetic biomarker for prognosis. The regulatory effects of MBD3 on glioma transcriptome were first profiled by high-throughput microarray. Our results indicate that MBD3 is involved in both transcriptional activation and repression. Furthermore, MBD3 fine-controls a spectrum of proteins critical for cellular metabolism and proliferation, thereby contributing to an exquisite anti-glioma network. Specifically, the expression of MHC class II molecules was found to positively correlate with MBD3, which provides new insight into the immune escape of gliomagenesis. In addition, MBD3 participates in constraining a number of oncogenic non-coding RNAs whose over-activation could drive cells into excessive growth and higher malignancy. Having followed up a pilot cohort, we noted that the survival of malignant glioma patients was proportional to the content of MBD3 and 5-hydroxymethylcytosine (5hmC) in their tumor cells. The progression-free survival (PFS) and overall survival (OS) were relatively poor for patients with lower amount of MBD3 and 5hmC in the tissue biopsies. Taken together, this work enriches our understanding of the mechanistic involvement of MBD3 in malignant glioma.

Indexed as

Gene Expression Regulation, Neoplastic5-MethylcytosineBrain NeoplasmsCell Line, TumorDisease-Free SurvivalDNA-Binding ProteinsGene Expression ProfilingGliomaHigh-Throughput Nucleotide SequencingHLA-D AntigensHumansMicroRNAsOligonucleotide Array Sequence AnalysisPilot ProjectsRNA InterferenceRNA, Long Noncoding5-hydroxymethylcytosine5-MethylcytosineDNA-Binding ProteinsHLA-D AntigensMBD3 protein, humanMicroRNAsMIRN17 microRNA, humanRNA, Long NoncodingRNA, UntranslatedDNA methylationepigeneticsgliomaMBD3prognostic biomarker

Identifiers

PMID27835581
PMCPMC5340251
OpenAlexW2552279962

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.