Evidence map›Paper›PMID 27834300›Full record

Trial reportThe Journal of international medical research2016

The SURMetaGIT study: Design and rationale for a prospective pan-omics examination of the gastrointestinal response to Roux-en-Y gastric bypass surgery.

Priscila Sala, Giliane Belarmino, Natasha Mendonça Machado, Camila Siqueira Cardinelli, Karina Al Assal, Mariane Marques Silva, Danielle Cristina Fonseca, Robson Kiyoshi Ishida, Marco Aurélio Santo, Eduardo Guimarães Hourneaux de Moura and 10 more

Abstract readClinical TrialObservational Study
In one paragraph

Trial report in The Journal of international medical research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Trial
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  4. Article
  5. Article
  6. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Priscila Sala1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Giliane Belarmino1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Natasha Mendonça Machado1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Camila Siqueira Cardinelli1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Karina Al Assal1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Mariane Marques Silva1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Danielle Cristina Fonseca1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Robson Kiyoshi Ishida1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Marco Aurélio Santo1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Eduardo Guimarães Hourneaux de Moura1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Paulo Sakai1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Ismael Francisco Mota Siqueira Guarda1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Ismael Dale Cotrim Guerreiro da Silva2 UNIFESP - Federal University of São Paulo, São Paulo, Brazil.
Agatha Sacramento Rodrigues3 Statistics Department of Mathematics and Statistics Institute (EMI) - USP, São Paulo, Brazil.
Carlos Alberto de Bragança Pereira3 Statistics Department of Mathematics and Statistics Institute (EMI) - USP, São Paulo, Brazil.
Steven Heymsfield4 Pennington Biomedical Research Center, Baton Rouge, Louisiana, LA, USA.
Joel Doré5 Institut National de la Recherche Agronomique INRA, France.
Raquel Susana Matos de Miranda Torrinhas1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.
Daniel Giannella-Neto6 University Nove de Julho, São Paulo, Brazil.
Dan Linetzky Waitzberg1 Department of Gastroenterology, Digestive Surgery Discipline, School of Medicine, FMUSP - University of São Paulo, São Paulo, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective To describe the protocol of the SURgically induced Metabolic effects on the Human GastroIntestinal Tract (SURMetaGIT) study, a clinical pan-omics study exploring the gastrointestinal tract as a central organ driving remission of type 2 diabetes mellitus (T2DM) after Roux-en-Y gastric bypass (RYGB). The main points considered in the study's design and challenges faced in its application are detailed. Methods This observational, longitudinal, prospective study involved collection of gastrointestinal biopsy specimens, faeces, urine, and blood from 25 obese women with T2DM who were candidates for RYGB (20 patients for omics assessment and 5 for omics validation). These collections were performed preoperatively and 3 and 24 months postoperatively. Gastrointestinal transcriptomics; faecal metagenomics and metabolomics; plasma proteomics, lipidomics, and metabolomics; and biochemical, nutritional, and metabolic data were assessed to identify their short- and long-term correlations with T2DM remission. Results Data were collected from 20 patients before and 3 months after RYGB. These patients have nearly completed the 2-year follow-up assessments. The five additional patients are currently being selected for omics data validation. Conclusion The multi-integrated pan-omics approach of the SURMetaGIT study enables integrated analysis of data that will contribute to the understanding of molecular mechanisms involved in T2DM remission after RYGB.

Indexed as

Gastric BypassTranscriptomeAdultBiopsyDiabetes Mellitus, Type 2FecesFeeding BehaviorFemaleGastrointestinal TractHumansLongitudinal StudiesMetabolomeMiddle AgedObesity, MorbidProspective StudiesProteomeProteomefaecal watergene expressionlipidomicmetabolomicmetagenomicmicrobiotaproteomicRoux-en-Y gastric bypasstype 2 diabetes mellitus

Identifiers

PMID27834300
PMCPMC5536762

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.