Evidence map›Paper›PMID 27833086›Full record

ArticleOncotarget2016

Comparative study of single-nucleotide polymorphism array and next generation sequencing based strategies on triploid identification in preimplantation genetic diagnosis and screen.

Jiawei Xu, Wenbin Niu, Zhaofeng Peng, Xiao Bao, Meixiang Zhang, Linlin Wang, Linqing Du, Nan Zhang, Yingpu Sun

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jiawei XuThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Wenbin NiuThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Zhaofeng PengThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Xiao BaoThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Meixiang ZhangThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Linlin WangThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Linqing DuThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Nan ZhangThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
Yingpu SunThe First Affiliated Hospital of Zhengzhou University, Centre for Reproductive Medicine, Zhengzhou, Henan 450000, China.
First Affiliated Hospital of Zhengzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Triploidy occurred about 2-3% in human pregnancies and contributed to approximately 15% of chromosomally caused human early miscarriage. It is essential for preimplantation genetic diagnosis and screen to distinct triploidy sensitively. Here, we performed comparative investigations between MALBAC-NGS and MDA-SNP array sensitivity on triploidy detection. Self-correction and reference-correction algorism were used to analyze the NGS data. We identified 5 triploid embryos in 1198 embryos of 218 PGD and PGS cycles using MDA-SNP array, the rate of tripoidy was 4.17‰ in PGS and PGD patients. Our results indicated that the MDA-SNP array was sensitive to digyny and diandry triploidy, MALBAC-NGS combined with self and reference genome correction strategies analyze were not sensitive to detect triploidy. Our study demonstrated that triploidy occurred at 4.17‰ in PGD and PGS, MDA-SNP array could successfully identify triploidy in PGD and PGS and genomic DNA. MALBAC-NGS combined with self and reference genome correction strategies were not sensitive to triploidy.

Indexed as

BlastocystHigh-Throughput Nucleotide SequencingOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideTriploidyAbortion, SpontaneousAdultFemaleGenetic Predisposition to DiseaseGenetic TestingHumansKaryotypePhenotypePredictive Value of TestsPregnancyPreimplantation DiagnosisMALBACnext generation sequencingpreimplantation genetic diagnosis and screenSNP arraytriploidy

Identifiers

PMID27833086
PMCPMC5348434
OpenAlexW2550805937

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.