Evidence map›Paper›PMID 27832824›Full record

ArticleGenome biology2016

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

Duane D McKenna, Erin D Scully, Yannick Pauchet, Kelli Hoover, Roy Kirsch, Scott M Geib, Robert F Mitchell, Robert M Waterhouse, Seung-Joon Ahn, Deanna Arsala and 57 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
31.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed, 297 citations in OpenAlex.

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89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

67 authors at 20 institutions in 4 countries.

Duane D McKennaDepartment of Biological Sciences, University of Memphis, 3700 Walker Ave., Memphis, TN, 38152, USA. dmckenna@memphis.edu.
Erin D ScullyUSDA, Agricultural Research Service, Center for Grain and Animal Health, Stored Product Insect and Engineering Research Unit, Manhattan, KS, 66502, USA.
Yannick PauchetDepartment of Entomology, Max Planck Institute for Chemical Ecology, Jena, 07745, Germany.
Kelli HooverDepartment of Entomology and Center for Chemical Ecology, The Pennsylvania State University, University Park, PA, 16802, USA.
Roy KirschDepartment of Entomology, Max Planck Institute for Chemical Ecology, Jena, 07745, Germany.
Scott M GeibUSDA, Agricultural Research Service, Daniel K Inouye US Pacific Basin Agricultural Research Center, Tropical Crop and Commodity Protection Research Unit, Hilo, HI, 96720, USA.
Robert F MitchellCenter for Insect Science and Department of Neuroscience, University of Arizona, Tucson, AZ, 85721, USA.
Robert M WaterhouseDepartment of Genetic Medicine and Development and Swiss Institute of Bioinformatics, University of Geneva, Geneva, 1211, Switzerland.
Seung-Joon AhnDepartment of Entomology, Max Planck Institute for Chemical Ecology, Jena, 07745, Germany.
Deanna ArsalaDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Joshua B BenoitDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.
Heath BlackmonDepartment of Biology, University of Texas at Arlington, Arlington, TX, 76019, USA.
Tiffany BledsoeCenter for Insect Science and Department of Neuroscience, University of Arizona, Tucson, AZ, 85721, USA.
Julia H BowsherDepartment of Biological Sciences, North Dakota State University, Fargo, ND, 58108, USA.
André BuschDepartment of Entomology, Max Planck Institute for Chemical Ecology, Jena, 07745, Germany.
Bernarda CallaUSDA, Agricultural Research Service, Daniel K Inouye US Pacific Basin Agricultural Research Center, Tropical Crop and Commodity Protection Research Unit, Hilo, HI, 96720, USA.
Hsu ChaoHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Anna K ChildersUSDA, Agricultural Research Service, Red River Valley Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, 58102, USA.
Christopher ChildersUSDA, Agricultural Research Service, National Agricultural Library, Beltsville, MD, 20705, USA.
Dave J ClarkeDepartment of Biological Sciences, University of Memphis, 3700 Walker Ave., Memphis, TN, 38152, USA.
Lorna CohenDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Jeffery P DemuthDepartment of Biology, University of Texas at Arlington, Arlington, TX, 76019, USA.
Huyen DinhHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
HarshaVardhan DoddapaneniHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Amanda DolanDepartment of Biology, University of Rochester, Rochester, NY, 14627, USA.
Jian J DuanUSDA, Agricultural Research Service, Beneficial Insects Introduction Research, Newark, DE, 19713, USA.
Shannon DuganHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Markus FriedrichDepartment of Biological Sciences, Wayne State University, Detroit, MI, 48202, USA.
Karl M GlastadSchool of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Michael A D GoodismanSchool of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
Stephanie HaddadDepartment of Biological Sciences, University of Memphis, 3700 Walker Ave., Memphis, TN, 38152, USA.
Yi HanHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Daniel S T HughesHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Panagiotis IoannidisDepartment of Genetic Medicine and Development and Swiss Institute of Bioinformatics, University of Geneva, Geneva, 1211, Switzerland.
J Spencer JohnstonDepartment of Entomology, Texas A&M University, College Station, TX, 77843, USA.
Jeffery W JonesDepartment of Biological Sciences, Wayne State University, Detroit, MI, 48202, USA.
Leslie A KuhnDepartment of Biochemistry and Molecular Biology, Department of Computers Science and Engineering, and Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI, 48824, USA.
David R LanceUSDA, Animal and Plant Health Inspection Service, Plant Pest and Quarantine, Center for Plant Health Science and Technology, Otis Laboratory, Buzzards Bay, MA, 02542, USA.
Chien-Yueh LeeUSDA, Agricultural Research Service, National Agricultural Library, Beltsville, MD, 20705, USA.
Sandra L LeeHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Han LinUSDA, Agricultural Research Service, National Agricultural Library, Beltsville, MD, 20705, USA.
Jeremy A LynchDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Armin P MoczekDepartment of Biology, Indiana University, Blomington, IN, 47405, USA.
Shwetha C MuraliHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Donna M MuznyHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
David R NelsonDepartment of Microbiology, Immunology, and Biochemistry, University of Tennessee Health Science Center, Memphis, TN, 38163, USA.
Subba R PalliDepartment of Entomology, University of Kentucky, Lexington, KY, 40546, USA.
Kristen A PanfilioInstitute for Developmental Biology, University of Cologne, Cologne, 50674, Germany.
Dan PersDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Monica F PoelchauUSDA, Agricultural Research Service, National Agricultural Library, Beltsville, MD, 20705, USA.
Honghu QuanDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Jiaxin QuHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Ann M RayDepartment of Biology, Xavier University, Cincinnati, OH, 45207, USA.
Joseph P RinehartUSDA, Agricultural Research Service, Red River Valley Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, 58102, USA.
Hugh M RobertsonDepartment of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Richard RoehrdanzUSDA, Agricultural Research Service, Red River Valley Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, 58102, USA.
Andrew J RosendaleDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.
Seunggwan ShinDepartment of Biological Sciences, University of Memphis, 3700 Walker Ave., Memphis, TN, 38152, USA.
Christian SilvaDepartment of Biology, University of Rochester, Rochester, NY, 14627, USA.
Alex S TorsonDepartment of Biological Sciences, North Dakota State University, Fargo, ND, 58108, USA.
Iris M Vargas JentzschInstitute for Developmental Biology, University of Cologne, Cologne, 50674, Germany.
John H WerrenDepartment of Biology, University of Rochester, Rochester, NY, 14627, USA.
Kim C WorleyHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
George YocumUSDA, Agricultural Research Service, Red River Valley Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, 58102, USA.
Evgeny M ZdobnovDepartment of Genetic Medicine and Development and Swiss Institute of Bioinformatics, University of Geneva, Geneva, 1211, Switzerland.
Richard A GibbsHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Stephen RichardsHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA. stephenr@bcm.edu.
Baylor Genetics · USAgricultural Research Service · USBaylor College of Medicine · USUniversity of Illinois Chicago · USMax Planck Institute for Chemical Ecology · DEEdward T. Schafer Agricultural Research Center · USUniversity of Rochester · USGeorgia Institute of Technology · USNational Taiwan University · TWNorth Dakota State University · USThe University of Texas at Arlington · USUniversity of Cincinnati · USUniversity of Cologne · DEUniversity of Geneva · CHUniversity of Memphis · USWalker (United States) · USWayne State University · USAnimal and Plant Health Inspection Service · USArizona Science Center · USDaniel K. Inouye U.S. Pacific Basin Agricultural Research Center · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
POST DOCTORAL EXCELLENCE IN RESEARCH AND TEACHINGK12GM000708 · NIGMS · UNIVERSITY OF ARIZONA · PI STRAUSFELD, NICHOLAS J · 2000 to 2018
$21.5M
NHGRI NIH HHS U54 HG003273NIGMS NIH HHS K12 GM000708
6 · The paper itself

Abstract

backgroundRelatively little is known about the genomic basis and evolution of wood-feeding in beetles. We undertook genome sequencing and annotation, gene expression assays, studies of plant cell wall degrading enzymes, and other functional and comparative studies of the Asian longhorned beetle, Anoplophora glabripennis, a globally significant invasive species capable of inflicting severe feeding damage on many important tree species. Complementary studies of genes encoding enzymes involved in digestion of woody plant tissues or detoxification of plant allelochemicals were undertaken with the genomes of 14 additional insects, including the newly sequenced emerald ash borer and bull-headed dung beetle.

resultsThe Asian longhorned beetle genome encodes a uniquely diverse arsenal of enzymes that can degrade the main polysaccharide networks in plant cell walls, detoxify plant allelochemicals, and otherwise facilitate feeding on woody plants. It has the metabolic plasticity needed to feed on diverse plant species, contributing to its highly invasive nature. Large expansions of chemosensory genes involved in the reception of pheromones and plant kairomones are consistent with the complexity of chemical cues it uses to find host plants and mates.

conclusionsAmplification and functional divergence of genes associated with specialized feeding on plants, including genes originally obtained via horizontal gene transfer from fungi and bacteria, contributed to the addition, expansion, and enhancement of the metabolic repertoire of the Asian longhorned beetle, certain other phytophagous beetles, and to a lesser degree, other phytophagous insects. Our results thus begin to establish a genomic basis for the evolutionary success of beetles on plants.

Indexed as

Sequence Analysis, DNAAnimalsColeopteraEvolution, MolecularGene Transfer, HorizontalGenome, InsectHost-Parasite InteractionsIntroduced SpeciesLarvaTreesChemoperceptionDetoxificationGlycoside hydrolaseHorizontal gene transferPhytophagyXylophagy

Identifiers

PMID27832824
PMCPMC5105290
OpenAlexW2551648304

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.