Evidence map›Paper›PMID 27832546›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Large-Scale RNA Interference Screening to Identify Transcriptional Regulators of a Tumor Suppressor Gene.

Matteo Forloni, Thuy Ho, Lisha Sun, Narendra Wajapeyee

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Matteo ForloniDepartment of Pathology, Yale University School of Medicine, 310 Cedar Street, 208023, New Haven, CT, 06518, USA.
Thuy HoDepartment of Pathology, Yale University School of Medicine, 310 Cedar Street, 208023, New Haven, CT, 06518, USA.
Lisha SunDepartment of Pathology, Yale University School of Medicine, 310 Cedar Street, 208023, New Haven, CT, 06518, USA.
Narendra WajapeyeeDepartment of Pathology, Yale University School of Medicine, 310 Cedar Street, 208023, New Haven, CT, 06518, USA. Narendra.Wajapeyee@yale.edu.
Yale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
A NOVEL DRUGGABLE GENETIC VULNERABILITY PATHWAY IN MELANOMAR01CA200919 · NCI · YALE UNIVERSITY · PI WAJAPEYEE, NARENDRA · 2016 to 2020
$1.8M
Nucleoporin NUP205-driven Novel Pathway in Melanoma Tumor Growth and MetastasisR01CA196566 · NCI · YALE UNIVERSITY · PI WAJAPEYEE, NARENDRA · 2016 to 2020
$1.8M
Metabolic Drivers of Melanoma Initiation, Progression and Therapy ResponseR21CA191364 · NCI · YALE UNIVERSITY · PI WAJAPEYEE, NARENDRA · 2015 to 2016
$398k
METABOLIC DRIVERS OF LUNG CANCER INITIATION, PROGRESSION AND THERAPY RESPONSER21CA197758 · NCI · YALE UNIVERSITY · PI WAJAPEYEE, NARENDRA · 2015 to 2016
$398k
ANOIKIS EFFECTORS AS DRIVERS OF METASTATIC MELANOMAR21CA195077 · NCI · YALE UNIVERSITY · PI WAJAPEYEE, NARENDRA · 2016 to 2016
$218k
NCATS NIH HHS UL1 TR001863NCI NIH HHS R01 CA196566NCI NIH HHS R01 CA200919NCI NIH HHS R21 CA191364NCI NIH HHS R21 CA195077NCI NIH HHS R21 CA197758
6 · The paper itself

Abstract

RNA interference (RNAi) is a powerful research tool that can be used to silence the expression of a specific gene. In the past several years, RNAi has provided the opportunity to identify factors and pathways involved in complex biological processes by performing unbiased loss-of-function screens on a genome-wide scale. Here we describe a genome-wide RNAi screening strategy to identify factors that regulates epigenetic silencing of a specific tumor suppressor gene, using RASSF1A as an example. The approach we describe is a general RNAi screening strategy that can be applied to identify other factors that drive and/or maintain epigenetic modifications on specific genes, including cancer-related genes.

Indexed as

Gene Expression Regulation, NeoplasticGene Knockdown TechniquesRNA InterferenceCell Line, TumorGene SilencingGenes, ReporterGenes, Tumor SuppressorHumansRNA, Small InterferingSequence Analysis, DNATransfectionRNA, Small InterferingEpigenetic silencingPositive-selection screenRNA interferenceshRNAsiRNA

Identifiers

PMID27832546
PMCPMC5340288
OpenAlexW2553835425

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.