Evidence map›Paper›PMID 27832372›Full record

ArticlePlanta2017

Isolation and application of P genome-specific DNA sequences of Agropyron Gaertn. in Triticeae.

Haiming Han, Weihua Liu, Yuqing Lu, Jinpeng Zhang, Xinming Yang, Xiuquan Li, Zanmin Hu, Lihui Li

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
11.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Introgression of chromosome 5P from Agropyron cristatum enhances grain weight in a wheat background.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Comparative Characterization ofPlants (Basel, Switzerland) · 2023
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Identification of 5P Chromosomes in Wheat-Frontiers in plant science · 2022
    Article
  13. Article
  14. Molecular Cytogenetic Analysis of the Introgression betweenInternational journal of molecular sciences · 2021
    Article
  15. Development and characterization of novelMolecular breeding : new strategies in plant improvement · 2021
    Article
  16. Copy Number Variation of Transposable Elements inPlants (Basel, Switzerland) · 2019
    Article
  17. Article
  18. Uncovering homeologous relationships between tetraploid Agropyron cristatum and bread wheat genomes using COS markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Haiming HanNational Key Facility for Crop Gene Resources and Genetic Improvement (NKCRI), Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Weihua LiuNational Key Facility for Crop Gene Resources and Genetic Improvement (NKCRI), Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Yuqing LuNational Key Facility for Crop Gene Resources and Genetic Improvement (NKCRI), Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jinpeng ZhangNational Key Facility for Crop Gene Resources and Genetic Improvement (NKCRI), Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Xinming YangNational Key Facility for Crop Gene Resources and Genetic Improvement (NKCRI), Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Xiuquan LiNational Key Facility for Crop Gene Resources and Genetic Improvement (NKCRI), Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Zanmin HuInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China. zmhu@genetics.ac.cn.
Lihui LiNational Key Facility for Crop Gene Resources and Genetic Improvement (NKCRI), Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. lilihui@caas.cn.
Chinese Academy of Agricultural Sciences · CNChinese Academy of Sciences · CNInstitute of Crop Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionDifferent types of P genome sequences and markers were developed, which could be used to analyze the evolution of P genome in Triticeae and identify precisely wheat- A. cristatum introgression lines. P genome of Agropyron Gaertn. plays an important role in Triticeae and could provide many desirable genes conferring high yield, disease resistance, and stress tolerance for wheat genetic improvement. Therefore, it is significant to develop specific sequences and functional markers of P genome. In this study, 126 sequences were isolated from the degenerate oligonucleotide primed-polymerase chain reaction (DOP-PCR) products of microdissected chromosome 6PS. Forty-eight sequences were identified as P genome-specific sequences by dot-blot hybridization and DNA sequences analysis. Among these sequences, 22 displayed the characteristics of retrotransposons, nine and one displayed the characteristics of DNA transposons and tandem repetitive sequence, respectively. Fourteen of 48 sequences were determined to distribute on different regions of P genome chromosomes by fluorescence in situ hybridization, and the distributing regions were as following: all over P genome chromosomes, centromeres, pericentromeric regions, distal regions, and terminal regions. We compared the P genome sequences with other genome sequences of Triticeae and found that the similar sequences of the P genome sequences were widespread in Triticeae, but differentiation occurred to various extents. Additionally, thirty-four molecular markers were developed from the P genome sequences, which could be used for analyzing the evolutionary relationship among 16 genomes of 18 species in Triticeae and identifying P genome chromatin in wheat-A. cristatum introgression lines. These results will not only facilitate the study of structure and evolution of P genome chromosomes, but also provide a rapid detecting tool for effective utilization of desirable genes of P genome in wheat improvement.

Indexed as

Genome, PlantAgropyronChromosomes, PlantDNA, PlantEvolution, MolecularGenetic MarkersIn Situ Hybridization, FluorescencePoaceaePolymerase Chain ReactionTriticumDNA, PlantGenetic MarkersEvolutionMolecular markerP genomeSpecific sequencesWheat-A. cristatum lines

Identifiers

PMID27832372
OpenAlexW2549793342

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.