Evidence map›Paper›PMID 27830770›Full record

ArticleScientific reports2016

Lineage diversification, homo- and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses.

Szilvia L Farkas, Szilvia Marton, Eszter Dandár, Renáta Kugler, Bence Gál, Ferenc Jakab, Ádám Bálint, Sándor Kecskeméti, Krisztián Bányai

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Szilvia L FarkasInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary.
Szilvia MartonInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary.
Eszter DandárUnited Szent István és Szent László Hospital - Clinic, Nagyvárad tér 1, Budapest 1097, Hungary.
Renáta KuglerInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary.
Bence GálInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary.
Ferenc JakabJános Szentágothai Research Centre, University of Pécs, Ifjúság útja 20, Pécs 7624, Hungary.
Ádám BálintVeterinary Diagnostic Directorate, National Food Chain Safety Office, Tábornok u. 2, Budapest 1143, Hungary.
Sándor KecskemétiVeterinary Diagnostic Directorate, National Food Chain Safety Office, Bornemissza u. 3-7, Debrecen 4031, Hungary.
Krisztián BányaiInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary.
HUN-REN Veterinary Medical Research Institute · HUCentre for Agricultural Research · HUNational Food Chain Safety Office · HUUnified Szent István and Szent László Hospital · HUUniversity of Pecs · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The near complete genome sequences of ten field avian orthoreovirus (ARV) strains collected from young chicken between 2002 and 2011 in Hungary have been determined in order to explore the genetic diversity and evolutionary mechanisms affecting ARVs in this region. Sequence analyses and phylogenetic calculations revealed similar geographic distribution and distinct evolution in case of eight studied strains that were closely related to the recently described Hungarian strain T1781. The remaining two strains showed the highest similarity with the US origin AVS-B. The topology of the phylogenetic trees of certain segments was affected by several potential homologous reassortment events between strains of Hungarian, Chinese and US origin. Analyzing the μB gene a possible heterologous reassortment event was identified in three Hungarian strains. Recombination events were detected in as much as a dozen cases implying that beside point mutations and reassorment this mechanism also plays an important role in the diversification of ARVs. All these mechanisms in concert may explain the reduced effectiveness of immunization using commercial vaccine strains.

Indexed as

Evolution, MolecularGene RearrangementGenetic VariationRecombination, GeneticAnimalsChickensGenome, ViralHungaryOrthoreovirus, AvianPhylogeographySequence Analysis, DNA

Identifiers

PMID27830770
PMCPMC5103266
OpenAlexW2551006054

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.