Evidence map›Paper›PMID 27830735›Full record

ArticleScientific reports2016

The use of targeted exome sequencing in genetic diagnosis of young patients with severe hypercholesterolemia.

Long Jiang, Wen-Feng Wu, Li-Yuan Sun, Pan-Pan Chen, Wei Wang, Asier Benito-Vicente, Fan Zhang, Xiao-Dong Pan, Wei Cui, Shi-Wei Yang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  8. Molecular mechanisms and genetic regulation in atherosclerosis.International journal of cardiology. Heart & vasculature · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Long JiangDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Wen-Feng WuDepartment of Emergency Intensive Care Unit, Beijing AnZhen Hospital, Capital Medical University, Beijing, 100029, China.
Li-Yuan SunDepartment of Dermatology, Beijing AnZhen Hospital, Capital Medical University, Beijing, 100029, China.
Pan-Pan ChenDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Wei WangDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Asier Benito-VicenteBiofisika Institute (UPV/EHU, CSIC) and Dpt. Biochemistry and Molecular Biology, University of the Basque Country, UPV/EHU, Spain.
Fan ZhangSchool of Computer Engineering, Nanyang Technological University, 639798, Singapore.
Xiao-Dong PanDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Wei CuiDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Shi-Wei YangDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Yu-Jie ZhouDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Cesar MartinBiofisika Institute (UPV/EHU, CSIC) and Dpt. Biochemistry and Molecular Biology, University of the Basque Country, UPV/EHU, Spain.
Lu-Ya WangDepartment of Atherosclerosis, Beijing An Zhen Hospital, Capital Medical University, Beijing Institute of Heart, Lung and Blood Vessel Diseases, 2 Anzhen Road, Chaoyang District, Beijing, 100029, China.
Capital Medical University · CNBeijing Anzhen Hospital · CNUniversity of the Basque Country · ESNanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Familial hypercholesterolemia (FH) is an autosomal dominant disorder. Although genetic testing is an important tool for detecting FH-causing mutations in patients, diagnostic methods for young patients with severe hypercholesterolemia are understudied. This study compares the target exome sequencing (TES) technique with the DNA resequencing array technique on young patients with severe hypercholesterolemia. A total of 20 unrelated patients (mean age 14.8 years) with total cholesterol > 10 mmol/L were included. 12 patient samples were processed by DNA resequencing array, 14 patient samples were processed by TES, and 6 patient samples were processed by both methods. Functional characterization of novel mutations was performed by flow cytometry. The mutation detection rate (MDR) of DNA resequencing array was 75%, while the MDR of TES was 100%. A total of 27 different mutations in the LDLR were identified, including 3 novel mutations and 8 mutations with previously unknown pathogenicity. Functional characterization of c.673delA, c.1363delC, p.Leu575Phe and p.Leu582Phe variants found that all of them are pathogenic. Additionally, 7 patients were diagnosed with Heterozygous FH (HeFH) in which lipid levels were significantly higher than common HeFH patients. This data indicates that TES is a very efficient tool for genetic diagnosis in young patients with severe hypercholesterolemia.

Indexed as

ExomeAdolescentAnimalsCHO CellsCricetulusDNA Mutational AnalysisFemaleHEK293 CellsHumansHypercholesterolemiaMaleMolecular Diagnostic TechniquesReceptors, LDLSequence Analysis, DNAReceptors, LDL

Identifiers

PMID27830735
PMCPMC5103295
OpenAlexW2554018570

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.