Evidence map›Paper›PMID 27830410›Full record

ArticleExtremophiles : life under extreme conditions2017

Characterization of two novel heat-active α-galactosidases from thermophilic bacteria.

Carola Schröder, Viktoria-Astrid Janzer, Georg Schirrmacher, Jörg Claren, Garabed Antranikian

Abstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

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  11. International Conference on Extremophiles 2016.Extremophiles : life under extreme conditions · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Carola SchröderInstitute of Technical Microbiology, Hamburg University of Technology, 21073, Hamburg, Germany.
Viktoria-Astrid JanzerInstitute of Technical Microbiology, Hamburg University of Technology, 21073, Hamburg, Germany.
Georg SchirrmacherClariant Produkte (Deutschland) GmbH, Group Biotechnology, 81477, Munich, Germany.
Jörg ClarenClariant Produkte (Deutschland) GmbH, Group Biotechnology, 81477, Munich, Germany.
Garabed AntranikianInstitute of Technical Microbiology, Hamburg University of Technology, 21073, Hamburg, Germany. antranikian@tuhh.de.
Universität Hamburg · DEClariant (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two genes (agal1 and agal2) encoding α-galactosidases were identified by sequence-based screening approaches. The gene agal1 was identified from a data set of a sequenced hot spring metagenome, and the deduced amino-acid sequence exhibited 99% identity to an α-galactosidase from the thermophilic bacterium Dictyoglomus thermophilum. The gene agal2 was identified from the whole genome sequence of the thermophile Meiothermus ruber. The amino-acid sequences exhibited structural motifs typical for glycoside hydrolase (GH) family 36 members and were also differentiated into different subgroups of this family. Recombinant production of the heat-active GH36b enzyme Agal1 (87 kDa) and GH36bt enzyme Agal2 (57 kDa) was carried out in E. coli. Agal1 exhibited a specific activity of 1502.3 U/mg at 80 °C, pH 6.5, and Agal2 225.4 U/mg at 60-70 °C, pH 6.5. Half-lives of 14 h (Agal1) and 39 h (Agal2) were obtained at 50 °C, and Agal1 showed half-lives of 4 and 2 h at 70 and 80 °C, respectively. In addition to the natural substrates melibiose, raffinose, and stachyose, 4NP α-D-galactopyranoside was hydrolyzed. Galactose was also liberated from locust bean gum. Both heat-active enzymes are attractive candidates for application in food and feed industry for high-temperature processes for the degradation of raffinose family oligosaccharides.

Indexed as

Hot Temperaturealpha-GalactosidaseAmino Acid MotifsBacterial ProteinsEnzyme StabilityGram-Negative BacteriaSubstrate Specificityalpha-GalactosidaseBacterial ProteinsDictyoglomus thermophilumRaffinose family oligosaccharidesThermostable α-galactosidase

Identifiers

PMID27830410
OpenAlexW2556150769

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.