Evidence map›Paper›PMID 27829666›Full record

ArticleGenes and immunity2016

Autoimmune risk variants in ERAP2 are associated with gene-expression levels in thymus.

I S M Gabrielsen, M K Viken, S S Amundsen, H Helgeland, K Holm, S T Flåm, B A Lie

Open access · hybridAbstract read
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In one paragraph

Article in Genes and immunity, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

I S M GabrielsenDepartment of Medical Genetics, University of Oslo and Oslo University Hospital, Oslo, Norway.
M K VikenDepartment of Medical Genetics, University of Oslo and Oslo University Hospital, Oslo, Norway.
S S AmundsenDepartment of Medical Genetics, University of Oslo and Oslo University Hospital, Oslo, Norway.
H HelgelandDepartment of Medical Genetics, University of Oslo and Oslo University Hospital, Oslo, Norway.
K HolmNorwegian PSC Research Center, Division of Cancer Medicine, Surgery and Transplantation, Oslo University Hospital, Oslo, Norway.
S T FlåmDepartment of Medical Genetics, University of Oslo and Oslo University Hospital, Oslo, Norway.
B A LieDepartment of Medical Genetics, University of Oslo and Oslo University Hospital, Oslo, Norway.
University of Oslo · NOOslo University Hospital · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic polymorphisms in the endoplasmic reticulum aminopeptidase (ERAP)1 and ERAP2 genes have been associated with several autoimmune diseases (AIDs) at a genome-wide significance level. In this study, we performed a cis expression quantitative trait locus (eQTL) screen to investigate whether seven fine-mapped AID single-nucleotide polymorphisms (SNPs) in the ERAP-region influence the gene-expression levels of ERAP1 and ERAP2 in thymus. After quality control, we identified six significant eQTLs. We further assessed the peak eQTL signals, and both genes showed highly significant and independent thymic eQTL signals (P=2.16 × 10

Indexed as

AminopeptidasesAutoimmune DiseasesChildChild, PreschoolFemaleGene ExpressionHaplotypesHumansInfantLinkage DisequilibriumMaleMinor Histocompatibility AntigensOrgan SpecificityPolymorphism, Single NucleotideQuantitative Trait LociRisk FactorsAminopeptidasesERAP1 protein, humanERAP2 protein, humanMinor Histocompatibility Antigens

Identifiers

PMID27829666
OpenAlexW2556261764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.