ArticleBMC evolutionary biology2016
Resolving Cypriniformes relationships using an anchored enrichment approach.
Article in BMC evolutionary biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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44 citing papers in PubMed, 129 citations in OpenAlex.
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- Molecular and Functional Divergence of Zebrafish Sox Paralogs Controlling Endoderm Formation and Left-Right Patterning.Genome biology and evolution · 2025Article
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- Goldfish phenomics reveals commonalities and a lack of universality in the domestication process for ornamentation.Evolution letters · 2024Article
- A chromosome-level genome assembly of East Asia endemic minnow Zacco platypus.Scientific data · 2024Article
- A high-quality reference genome for the common creek chub, Semotilus atromaculatus.G3 (Bethesda, Md.) · 2024Article
- Chromosomes of Asian cyprinid fishes: Novel insight into the chromosomal evolution of Labeoninae (Teleostei, Cyprinidae).PloS one · 2024Article
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- Dactylogyrus spp. (Dactylogyridae, Monogenea) from tinfoil barb, Barbonymus schwanenfeldii imported into South Africa: morphometric and molecular characterisation.Parasite (Paris, France) · 2023Article
- Characterization of the complete mitochondrial genome sequence ofMitochondrial DNA. Part B, Resources · 2023Article
- Nearctic Dactylogyrus species (Platyhelminthes, Monogenea) parasitizing cypriniform fishes in the context of morphology and phylogeny, with descriptions of seven new species.Parasite (Paris, France) · 2023Article
- Towards the phylogenetic placement of the enigmatic African genus Prolabeops Schultz, 1941.Journal of fish biology · 2022Article
- FishPIE: A universal phylogenetically informative exon markers set for ray-finned fishes.iScience · 2022Article
- Phylogeographical Analysis of the Freshwater GudgeonLife (Basel, Switzerland) · 2022Article
- Phylogenomics of trophically diverse cichlids disentangles processes driving adaptive radiation and repeated trophic transitions.Ecology and evolution · 2022Article
- Thyroid hormone shapes craniofacial bones during postembryonic zebrafish development.Evolution & development · 2022Article
- Article
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundCypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world (~4300 described species). Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. In this study we present the first phylogenomic analysis using anchored hybrid enrichment for 172 taxa to represent the order (plus three out-group taxa), which is the largest dataset for the order to date (219 loci, 315,288 bp, average locus length of 1011 bp).
resultsConcatenation analysis establishes a robust tree with 97 % of nodes at 100 % bootstrap support. Species tree analysis was highly congruent with the concatenation analysis with only two major differences: monophyly of Cobitoidei and placement of Danionidae.
conclusionsMost major clades obtained in prior molecular studies were validated as monophyletic, and we provide robust resolution for the relationships among these clades for the first time. These relationships can be used as a framework for addressing a variety of evolutionary questions (e.g. phylogeography, polyploidization, diversification, trait evolution, comparative genomics) for which Cypriniformes is ideally suited.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.