ArticleBMC genomics2016
Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size.
Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 63 citations in OpenAlex.
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- Comparative gametogenesis and genomic signatures associated with pollen sterility in the seedless mutant of grapevine.BMC plant biology · 2025Article
- Characterization of Main Responsive Genes Reveals Their Regulatory Network Attended by Multi-Biological Metabolic Pathways in Paclobutrazol (PAC)-Modulated Grape Seed Development (GSD) at the Stone-Hardening Stage.International journal of molecular sciences · 2025Article
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- Antibody array-based proteome approach reveals proteins involved in grape seed development.Plant physiology · 2024Article
- Control of ovule development inHorticulture research · 2023Article
- Improvement of RNA In Situ Hybridisation for Grapevine Fruits and Ovules.International journal of molecular sciences · 2023Article
- Translational profile of coding and non-coding RNAs revealed by genome wide profiling of ribosome footprints in grapevine.Frontiers in plant science · 2023Article
- Machine-Learning-Based Genome-Wide Association Studies for Uncovering QTL Underlying Soybean Yield and Its Components.International journal of molecular sciences · 2022Article
- Fertility analysis of intraspecific hybrids inFrontiers in plant science · 2022Article
- VviAGL11 self-regulates and targets hormone- and secondary metabolism-related genes during seed development.Horticulture research · 2022Article
- Systematic genome-wide and expression analysis of RNA-directed DNA methylation pathway genes in grapes predicts their involvement in multiple biological processes.Frontiers in plant science · 2022Article
- The co-expression of genes involved in seed coat and endosperm development promotes seed abortion in grapevine.Planta · 2021Article
- VvHDZ28 positively regulate salicylic acid biosynthesis during seed abortion in Thompson Seedless.Plant biotechnology journal · 2021Article
- Genome-wide identification and expression analysis of the B-box transcription factor gene family in grapevine (Vitis vinifera L.).BMC genomics · 2021Article
- Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling.BMC plant biology · 2020Article
- A proteomic analysis of peanut seed at different stages of underground development to understand the changes of seed proteins.PloS one · 2020Article
- Dissection of soybean populations according to selection signatures based on whole-genome sequences.GigaScience · 2019Article
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSeedlessness in grape (Vitis vinifera) is of considerable commercial importance for both the table grape and processing industries. Studies to date of grape seed development have been made certain progress, but many key genes have yet to be identified and characterized.
resultsIn this study we analyzed the seed transcriptomes of progeny derived from the V. vinifera seeded maternal parent 'Red Globe' and the seedless paternal parent 'Centennial seedless' to identify genes associated with seedlessness. A total of 6,607 differentially expressed genes (DEGs) were identified and examined from multiple perspectives, including expression patterns, Gene Ontology (GO) annotations, pathway enrichment, inferred hormone influence and epigenetic regulation. The expression data of hormone-related genes and hormone level measurement reveals the differences during seed development between seedless and seeded progeny. Based on both our results and previous studies of A. thaliana seed development, we generated network maps of grape seed-related DEGs, with particular reference to hormone balance, seed coat and endosperm development, and seed identity complexes.
conclusionIn summary, the major differences identified during seed development of seedless and seeded progeny were associated with hormone and epigenetic regulation, the development of the seed coat and endosperm, and the formation of seed identity complexes. Overall the data provides insights into the possible molecular mechanism controlling grape seed size, which is of great importance for both basic research and future translation applications in the grape industry.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.