Evidence map›Paper›PMID 27829070›Full record

ArticlePLoS pathogens2016

Structure of a Spumaretrovirus Gag Central Domain Reveals an Ancient Retroviral Capsid.

Neil J Ball, Giuseppe Nicastro, Moumita Dutta, Dominic J Pollard, David C Goldstone, Marta Sanz-Ramos, Andres Ramos, Erik Müllers, Kristin Stirnnagel, Nicole Stanke and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Gag proteins encoded by endogenous retroviruses are required for zebrafish development.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Structure ofScience advances · 2020
    Article
  9. Article
  10. Review
  11. Structure of the Ty3/Gypsy retrotransposon capsid and the evolution of retroviruses.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Neil J BallMacromolecular Structure Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
Giuseppe NicastroMacromolecular Structure Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
Moumita DuttaStructural Biology of Cells and Viruses, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
Dominic J PollardMacromolecular Structure Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
David C GoldstoneMacromolecular Structure Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
Marta Sanz-RamosRetrovirus-Host Interactions Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.ORCID http://orcid.org/0000-0003-0850-5997
Andres RamosMacromolecular Structure Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
Erik MüllersInstitute of Virology, Technische Universität Dresden, Dresden, DE.
Kristin StirnnagelInstitute of Virology, Technische Universität Dresden, Dresden, DE.
Nicole StankeInstitute of Virology, Technische Universität Dresden, Dresden, DE.
Dirk LindemannInstitute of Virology, Technische Universität Dresden, Dresden, DE.
Jonathan P StoyeRetrovirus-Host Interactions Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.ORCID http://orcid.org/0000-0003-3377-323X
William R TaylorComputational Cell and Molecular Biology Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
Peter B RosenthalStructural Biology of Cells and Viruses, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.
Ian A TaylorMacromolecular Structure Laboratory, The Francis Crick Institute, Mill Hill Laboratory, London, United Kingdom.ORCID http://orcid.org/0000-0002-6763-3852
The Francis Crick Institute · GBTechnische Universität Dresden · DE

Funding

Medical Research Council MC_PC_13051Medical Research Council MC_U117512710Medical Research Council MC_U117533887Wellcome Trust
6 · The paper itself

Abstract

The Spumaretrovirinae, or foamy viruses (FVs) are complex retroviruses that infect many species of monkey and ape. Despite little sequence homology, FV and orthoretroviral Gag proteins perform equivalent functions, including genome packaging, virion assembly, trafficking and membrane targeting. However, there is a paucity of structural information for FVs and it is unclear how disparate FV and orthoretroviral Gag molecules share the same function. To probe the functional overlap of FV and orthoretroviral Gag we have determined the structure of a central region of Gag from the Prototype FV (PFV). The structure comprises two all α-helical domains NtDCEN and CtDCEN that although they have no sequence similarity, we show they share the same core fold as the N- (NtDCA) and C-terminal domains (CtDCA) of archetypal orthoretroviral capsid protein (CA). Moreover, structural comparisons with orthoretroviral CA align PFV NtDCEN and CtDCEN with NtDCA and CtDCA respectively. Further in vitro and functional virological assays reveal that residues making inter-domain NtDCEN-CtDCEN interactions are required for PFV capsid assembly and that intact capsid is required for PFV reverse transcription. These data provide the first information that relates the Gag proteins of Spuma and Orthoretrovirinae and suggests a common ancestor for both lineages containing an ancient CA fold.

Indexed as

Amino Acid SequenceAnimalsBlotting, WesternCapsidCapsid ProteinsCell LineGene Products, gagHumansNuclear Magnetic Resonance, BiomolecularProtein ConformationReal-Time Polymerase Chain ReactionSpumavirusVirus AssemblyCapsid ProteinsGene Products, gag

Identifiers

PMID27829070
PMCPMC5102385
OpenAlexW2550356838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.