Evidence map›Paper›PMID 27829056›Full record

ArticlePloS one2016

Genome-Wide Identification, Characterization, and Stress-Responsive Expression Profiling of Genes Encoding LEA (Late Embryogenesis Abundant) Proteins in Moso Bamboo (Phyllostachys edulis).

Zhuo Huang, Xiao-Juan Zhong, Jiao He, Si-Han Jin, Han-Du Guo, Xiao-Fang Yu, Yu-Jue Zhou, Xi Li, Ming-Dong Ma, Qi-Bing Chen and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
11.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 61 citations in OpenAlex.

  1. Frontiers in plant science · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Transcriptome Analysis of Moso Bamboo (Frontiers in plant science · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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  18. Article
  19. MiningInternational journal of molecular sciences · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Zhuo HuangCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Xiao-Juan ZhongCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Jiao HeCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Si-Han JinCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Han-Du GuoCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Xiao-Fang YuCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Yu-Jue ZhouCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Xi LiCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Ming-Dong MaCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Qi-Bing ChenCollege of Landscape Architecture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang, Chengdu 611130, Sichuan, China.
Hai LongChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan, China.
Sichuan Agricultural University · CNChengdu Institute of Biology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Late embryogenesis abundant (LEA) proteins have been identified in a wide range of organisms and are believed to play a role in the adaptation of plants to stress conditions. In this study, we performed genome-wide identification of LEA proteins and their coding genes in Moso bamboo (Phyllostachys edulis) of Poaceae. A total of 23 genes encoding LEA proteins (PeLEAs) were found in P. edulis that could be classified to six groups based on Pfam protein family and homologous analysis. Further in silico analyses of the structures, gene amount, and biochemical characteristics were conducted and compared with those of O. sativa (OsLEAs), B. distachyon (BdLEAs), Z. mays (ZmLEAs), S. bicolor (SbLEAs), Arabidopsis, and Populus trichocarpa. The less number of PeLEAs was found. Evolutionary analysis revealed orthologous relationship and colinearity between P. edulis, O. sativa, B. distachyon, Z. mays, and S. bicolor. Analyses of the non-synonymous (Ka) and synonymous (Ks)substitution rates and their ratios indicated that the duplication of PeLEAs may have occurred around 18.8 million years ago (MYA), and divergence time of LEA family among the P. edulis-O. sativa and P. edulis-B. distachyon, P. edulis-S. bicolor, and P. edulis-Z. mays was approximately 30 MYA, 36 MYA, 48 MYA, and 53 MYA, respectively. Almost all PeLEAs contain ABA- and (or) stress-responsive regulatory elements. Further RNA-seq analysis revealed approximately 78% of PeLEAs could be up-regulated by dehydration and cold stresses. The present study makes insights into the LEA family in P. edulis and provides inventory of stress-responsive genes for further functional validation and transgenic research aiming to plant genetic improvement of abiotic stress tolerance.

Indexed as

Gene Expression Regulation, PlantAdaptation, PhysiologicalChromosome MappingChromosomes, PlantCold TemperatureDroughtsEvolution, MolecularGene Expression ProfilingGenetic VariationGenome, PlantMultigene FamilyOryzaPlant ProteinsPoaceaeStress, PhysiologicalSyntenylate embryogenesis abundant protein, plantPlant Proteins

Identifiers

PMID27829056
PMCPMC5102402
OpenAlexW2553210263

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.