Evidence map›Paper›PMID 27829005›Full record

ArticlePloS one2016

Gastroenteritis Outbreaks Associated with the Emergence of the New GII.4 Sydney Norovirus Variant during the Epidemic of 2012/13 in Shenzhen City, China.

Yaqing He, Miao Jin, Kena Chen, Hailong Zhang, Hong Yang, Fei Zhuo, Dejian Zhao, Huatang Zeng, Xiangjie Yao, Zhen Zhang and 3 more

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yaqing HeSouthern Medical University, Guangzhou, Guangdong, China.
Miao JinKey Laboratory of Medical Virology and Viral Diseases; National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Kena ChenKey Laboratory of Medical Virology and Viral Diseases; National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Hailong ZhangShenzhen Center for Disease Control and Prevention, Shenzhen, China.
Hong YangShenzhen Center for Disease Control and Prevention, Shenzhen, China.
Fei ZhuoShenzhen Luohu Center for Disease Control and Prevention, Shenzhen, China.
Dejian ZhaoShenzhen Center for Disease Control and Prevention, Shenzhen, China.
Huatang ZengShenzhen Center for Disease Control and Prevention, Shenzhen, China.
Xiangjie YaoShenzhen Center for Disease Control and Prevention, Shenzhen, China.
Zhen ZhangShenzhen Center for Disease Control and Prevention, Shenzhen, China.
Long ChenShenzhen Center for Disease Control and Prevention, Shenzhen, China.
Yuanping ZhouSouthern Medical University, Guangzhou, Guangdong, China.
Zhao-Jun DuanKey Laboratory of Medical Virology and Viral Diseases; National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noroviruses (NoVs) are the leading cause of gastroenteritis outbreaks in humans worldwide. Since late 2012, a new GII.4 variant Sydney 2012 has caused a significant increase in NoV epidemics in several countries. From November of 2012 to January of 2013, three gastroenteritis outbreaks occurred in two social welfare homes (Outbreaks A and B) and a factory (Outbreak C) in Shenzhen city of China. Feces and swabs were collected for laboratory tests for causative agents. While no bacterial pathogen was identified, all three outbreaks were caused by NoVs with detection rates of 26.2% (16/61) at Outbreak A, 35.2% (38/108) at Outbreak B), and 59.3% (16/27) at Outbreaks C. For Outbreak B, 25 of the 29 symptomatic individuals (86.2%) and 13 of the 79 asymptomatic individuals (16.5%) were found NoV-positive. For Outbreak C, an asymptomatic food handler was NoV-positive. All thirteen NoV sequences from the three outbreaks were classified into genogroup II and genotype 4 (GII.4), which we identified to be the GII.4 Sydney 2012 variant. The genome of two isolates from Outbreaks A and B were recombinant with the opening reading frame (ORF) 1 of GII.4 Osaka 2007 and ORF2 and 3 of the GII.4 New Orleans. Our study indicated that the GII.4 Sydney 2012 variant emerged and caused the outbreaks in China.

Indexed as

Genetic VariationAgedAged, 80 and overCaliciviridae InfectionsCapsid ProteinsChinaDisease OutbreaksEpidemicsFecesFemaleGastroenteritisGenome, ViralGenotypeHost-Pathogen InteractionsHumansMaleCapsid Proteins

Identifiers

PMID27829005
PMCPMC5102426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.