Evidence map›Paper›PMID 27827795›Full record

ArticleEMBO reports2017

Peroxisomal protein PEX13 functions in selective autophagy.

Ming Y Lee, Rhea Sumpter, Zhongju Zou, Shyam Sirasanagandla, Yongjie Wei, Prashant Mishra, Hendrik Rosewich, Denis I Crane, Beth Levine

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Role of autophagy in antiviral innate immunity.Cellular & molecular biology letters · 2026
    Review
  4. Article
  5. Review
  6. Article
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  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Moments in autophagy and disease: Past and present.Molecular aspects of medicine · 2021
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Ming Y LeeCenter for Autophagy Research, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Rhea SumpterCenter for Autophagy Research, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Zhongju ZouCenter for Autophagy Research, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Shyam SirasanagandlaCenter for Autophagy Research, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Yongjie WeiCenter for Autophagy Research, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Prashant MishraChildren's Medical Center Research Institute at the University of Texas Southwestern Medical Center, Dallas, TX, USA.
Hendrik RosewichDepartment of Pediatrics and Pediatric Neurology, Georg August University, Göttingen, Germany.
Denis I CraneEskitis Institute for Drug Discovery and School of Natural Sciences Griffith University, Nathan, Qld, Australia.
Beth LevineCenter for Autophagy Research, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA beth.levine@utsouthwestern.edu.ORCID 0000-0002-1460-1638
Howard Hughes Medical Institute · USThe University of Texas Southwestern Medical Center · USChildren's Medical Center · USGriffith University · AUUniversity of Göttingen · DE

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
Genetic and Pathway Analysis CoreU19AI109725 · NIAID · WASHINGTON UNIVERSITY · PI VIRGIN, HERBERT W · 2014 to 2018
$32.7M
Beclin 1-Bcl-2 Interactions: Effects on AutophagyR01CA109618 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI LEVINE, BETH C · 2004 to 2014
$3.1M
Novel host factors in selective autophagy of virusesK08AI099150 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI SUMPTER, RHEA M · 2012 to 2014
$391k
NCI NIH HHS P30 CA142543NCI NIH HHS R01 CA109618NIAID NIH HHS K08 AI099150NIAID NIH HHS U19 AI109725
6 · The paper itself

Abstract

PEX13 is an integral membrane protein on the peroxisome that regulates peroxisomal matrix protein import during peroxisome biogenesis. Mutations in PEX13 and other peroxin proteins are associated with Zellweger syndrome spectrum (ZSS) disorders, a subtype of peroxisome biogenesis disorder characterized by prominent neurological, hepatic, and renal abnormalities leading to neonatal death. The lack of functional peroxisomes in ZSS patients is widely accepted as the underlying cause of disease; however, our understanding of disease pathogenesis is still incomplete. Here, we demonstrate that PEX13 is required for selective autophagy of Sindbis virus (virophagy) and of damaged mitochondria (mitophagy) and that disease-associated PEX13 mutants I326T and W313G are defective in mitophagy. The mitophagy function of PEX13 is shared with another peroxin family member PEX3, but not with two other peroxins, PEX14 and PEX19, which are required for general autophagy. Together, our results demonstrate that PEX13 is required for selective autophagy, and suggest that dysregulation of PEX13-mediated mitophagy may contribute to ZSS pathogenesis.

Indexed as

AutophagyAnimalsCell LineGene Knockdown TechniquesHumansMembrane ProteinsMiceMice, TransgenicMitochondriaMitophagyPeroxisomesProtein BindingProtein TransportRNA, Small InterferingSindbis VirusUbiquitin-Protein LigasesMembrane Proteinsparkin proteinPEX13 protein, humanRNA, Small InterferingUbiquitin-Protein LigasesautophagymitophagyPEX13virophagyZellweger syndrome

Identifiers

PMID27827795
PMCPMC5210156
OpenAlexW2551407215

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.