Evidence map›Paper›PMID 27825339›Full record

ArticleBMC biotechnology2016

Improvement of alkalophilicity of an alkaline xylanase Xyn11A-LC from Bacillus sp. SN5 by random mutation and Glu135 saturation mutagenesis.

Wenqin Bai, Yufan Cao, Jun Liu, Qinhong Wang, Zhenhu Jia

Abstract read
In one paragraph

Article in BMC biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Expression inInternational journal of molecular sciences · 2024
    Article
  3. Engineering mesophilic GH11 xylanase fromFrontiers in bioengineering and biotechnology · 2022
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Wenqin BaiDepartment of Strategic and Integrative Research, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 300308, Tianjin, China. bai_wq@tib.cas.cn.
Yufan CaoDepartment of Strategic and Integrative Research, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 300308, Tianjin, China.
Jun LiuDepartment of Strategic and Integrative Research, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 300308, Tianjin, China.
Qinhong WangDepartment of Strategic and Integrative Research, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 300308, Tianjin, China.
Zhenhu JiaCollege of Life Science, Shanxi Normal University, Linfen, 041004, China. jiaxueshi@163.com.

Funding

Mediating and Moderating Effects of Fetal Alcohol-Related Iron Deficiency in FASDR21AA022203 · NIAAA · WAYNE STATE UNIVERSITY · PI CARTER, ROBERT COLIN, JACOBSON, SANDRA W. · 2014 to 2015
$405k
NIAAA NIH HHS R21 AA022203
6 · The paper itself

Abstract

backgroundFamily 11 alkaline xylanases have great potential economic applications in the pulp and paper industry. In this study, we would improve the alkalophilicity of family 11 alkaline xylanase Xyn11A-LC from Bacillus sp. SN5, for the better application in this field.

resultsA random mutation library of Xyn11A-LC with about 10,000 clones was constructed by error-prone PCR. One mutant, M52-C10 (V116A and E135V), with improved alkalophilicity was obtained from the library. Site-directed mutation showed that the mutation E135V was responsible for the alkalophilicity of the mutant. The variant E135V shifted the optimum pH of the wild-type enzyme from 7.5 to 8.0. Compared to the relative activities of the wild type enzyme, those of the mutant E135V increased by 17.5, 18.9, 14.3 and 9.5 % at pH 8.5, 9.0, 9.5 and 10.0, respectively. Furthermore, Glu135 saturation mutagenesis showed that the only mutant to have better alkalophilicity than E135V was E135R. The optimal pH of the mutant E135R was 8.5, 1.0 pH units higher than that of the wild-type. In addition, compared to the wild-type enzyme, the mutations E135V and E135R increased the catalytic efficiency (k

conclusionsMutants E135V and E135R with improved alkalophilicity were obtained by directed evolution and site saturation mutagenesis. The residue at position 135 in the eight-residue loop on the protein surface was found to play an important role in the pH activity profile of family 11 xylanases. This study provided alkalophilic mutants for application in bleaching process, and it was also helpful to understand the alkaline adaptation mechanism of family 11 xylanases.

Indexed as

AlkaliesBacillusEndo-1,4-beta XylanasesEnzyme ActivationGenetic EnhancementGlutamineHydrogen-Ion ConcentrationMutagenesis, Site-DirectedMutationProtein EngineeringRandom AllocationAlkaliesEndo-1,4-beta XylanasesGlutamineAlkalophilicityCatalytic efficiencyError-prone PCRSite-directed mutationSite-saturation mutagenesisXylanase

Identifiers

PMID27825339
PMCPMC5101721

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.