Evidence map›Paper›PMID 27825300›Full record

ArticleBMC genomics2016

Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma.

Bin Wang, Ni Ye, San-Jie Cao, Xin-Tian Wen, Yong Huang, Qi-Gui Yan

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Bin WangCollege of Veterinary Medicine, Sichuan Agricultural University, Hui Min Road 211, Chengdu, Sichuan, 611130, People's Republic of China.
Ni YeCollege of Veterinary Medicine, Sichuan Agricultural University, Hui Min Road 211, Chengdu, Sichuan, 611130, People's Republic of China.
San-Jie CaoCollege of Veterinary Medicine, Sichuan Agricultural University, Hui Min Road 211, Chengdu, Sichuan, 611130, People's Republic of China.
Xin-Tian WenCollege of Veterinary Medicine, Sichuan Agricultural University, Hui Min Road 211, Chengdu, Sichuan, 611130, People's Republic of China.
Yong HuangCollege of Veterinary Medicine, Sichuan Agricultural University, Hui Min Road 211, Chengdu, Sichuan, 611130, People's Republic of China.
Qi-Gui YanCollege of Veterinary Medicine, Sichuan Agricultural University, Hui Min Road 211, Chengdu, Sichuan, 611130, People's Republic of China. yanqigui@126.com.
Sichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMicroRNAs (miRNAs) post-transcriptionally regulate a variety of genes involved in eukaryotic cell growth, development, metabolism and other biological processes, and numerous miRNAs are implicated in the initiation and progression of cancer. Enzootic nasal adenocarcinoma (ENA), an epithelial tumor induced in goats and sheep by enzootic nasal tumor virus (ENTV), is a chronic, progressive, contact transmitted disease.

methodsIn this work, small RNA Illumina high-throughput sequencing was used to construct a goat nasal miRNA library. This study aimed to identify novel and differentially expressed miRNAs in the tumor and para-carcinoma nasal tissues of Nanjiang yellow goats with ENA.

resultsFour hundred six known miRNAs and 29 novel miRNAs were identified. A total of 116 miRNAs were significantly differentially expressed in para-carcinoma nasal tissues and ENA (54 downregulated; 60 upregulated; two only expressed in control group); Target gene prediction and functional analysis revealed that 6176 non-redundancy target genes, 1792 significant GO and 97 significant KEGG pathway for 121 miRNAs (116 significant expression miRNAs and five star sequence) were predicted. GO and KEGG pathway analysis revealed the majority of target genes in ENA are involved in cell proliferation, signal transduction and other processes associated with cancer.

conclusionsThis is the first large-scale identification of miRNAs in Capra hircus ENA and provides a theoretical basis for investigating the complicated miRNA-mediated regulatory networks involved in the pathogenesis and progression of ENA.

Indexed as

Gene Expression Regulation, NeoplasticAdenocarcinomaAnimal DiseasesAnimalsComputational BiologyDatabases, Nucleic AcidGene LibraryGene OntologyGene Regulatory NetworksGoatsMicroRNAsMolecular Sequence AnnotationNose NeoplasmsRNA InterferenceRNA, MessengerMicroRNAsRNA, MessengerEnzootic nasal adenocarcinomaGene ontologyIllumina high-throughput sequencingKEGG pathwayMicroRNA

Identifiers

PMID27825300
PMCPMC5101819
OpenAlexW2550007876

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.